[Bioperl-l] Repeat element check

M K. Govind mk_govind at rediffmail.com
Thu May 22 14:59:24 EDT 2003


Hi all

I have been using the Bioperl TOOls module (Remote blast) for 
submitting blast request to NCBI.

I belive that the low complexity filter is on when blast is 
submitted to the NCBI using this module.
I would like to know

1..How do i turn the low complexity filter off
2. How do i use the human repeat masker . (The NCBI blast web site 
has got a parameter in blast page )
3.Is there anyway that we could use the human repeat masker along 
with the remote blast?

Thanks in advance
-Govind
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