[Bioperl-l] SearchIO, last hit in blast report dropped

[Jason Stajich]

It is now fixed on 1.2 branch - it will be included in the 1.2.2 release
and you can apply the patch which is associated with the bug to the
1.2.1 release (or do a CVS checkout of the 1.2 branch)

-jason
On Tue, 27 May 2003, claus vogl wrote:

> Dear Jason,
>
> I looked in the bioperl cvs directories with a browser and found that
> the blast files are older than possible for the bug to be fixed. Then I
> thought I might need cvs for it, but actually don't know what to do with
> it.
>
> Can you please help! Others may have the same problems.
>
> Thanks a lot
>
> Claus
>
> Jason Stajich wrote:
>
> >As I already added to the bug report, this is already fixed on the main
> >trunk code (what is in CVS).
> >
> >On Sat, 24 May 2003, claus vogl wrote:
> >
> >
> >
> >>Dear All,
> >>
> >>When parsing a blast report, SearchIO consistently misses the last hit.
> >>Michael already pointed this out in a bug report. Is this problem fixed
> >>by now? I would need this feature in shape for my work, because I often
> >>have reports with just a single hit, which are now skipped entirely by
> >>SearchIO.
> >>
> >>Baba (bye in Viennese dialect)
> >>
> >>Claus
> >>
> >>
>
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu