[Bioperl-l] tests failing miserably

[Jason Stajich]

Had an outstanding commit that hadn't made it in - should be fine now.

-j
On Thu, 15 May 2003, Hilmar Lapp wrote:

> I just realized that this is jason's new SearchIO sim4 parser that is
> being noisy and sloppy. So I assume this is work in progress Jason?
>
> 	-hilmar
>
> On Wednesday, May 14, 2003, at 03:16  PM, Hilmar Lapp wrote:
>
> > Sim4.t:
> > lots of warnings in the form
> > -------------------- WARNING ---------------------
> > MSG: Did not defined the number of conserved matches in the HSP
> > assuming conserved == identical (118)
> > ---------------------------------------------------
> >
> > Failures are all 0/1 mismatches like
> > not ok 112
> > # Test 112 got: '0' (t/Sim4.t at line 217)
> > #     Expected: '1'
> >
>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu