[Bioperl-l] bioperl on MacOS X... a beginner's problems...

[Jason Stajich]

and of course
source /sw/bin/init.csh is definitely in your .cshrc.... (or the
equivalent for bash)?

On Thu, 15 May 2003, Thomas Keller wrote:

> Stefanie,
> This sounds like your perl is not configured to look in the directory
> where fink is installing the modules.
> You can inform perl where they are by adding:
> use lib '/my/fink/perlmodulesdirectory';
> to your script, then
> use Bio::SeqIO; or whatever should work.
>
> Refer to Jason Stajich's message for a more "universal" fix.
> Also, from the command line, check @INC by typing:
> % find `perl -e 'print "@INC"'` -name '*.pm' -print
> ## finds all perl modules in @INC, pipe to grep to find a specific
> module
>
> good luck,
> Tom K.
>
> On Thursday, May 15, 2003, at 09:18  AM, Stefanie wrote:
>
> >
> > hi there!
> >
> > I'm not sure if this is even the right discussion board for my
> > question (if not: which is?)...
> > Anyway, I am working under Mac OS X (10.2.6), I have Perl 5.8
> > installed, and I installed the BioPerl Bundle using fink. And: I am
> > quite new to all of this.
> > Installation seems to have worked - but yet the bioperl modules are
> > not recognized / cannot be loaded.
> > I think it's some problem related to a PATH not being set correctly,
> > but I'm not sure how to solve it.
> > Is there anyone who can help or who can show me where to get help on
> > this?
> > Thanks a lot!
> >
> > Stef
> > _______________________________________________
> > Bioperl-l mailing list
> > Bioperl-l at bioperl.org
> > http://pw600a.bioperl.org/mailman/listinfo/bioperl-l
> >
> >
> Tom Keller, Ph.D.
> http://www.ohsu.edu/core
> kellert at ohsu.edu
> 503-494-2442
>
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>

--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu