[Bioperl-l] module

[Jason Stajich]

No, but you could write a script to do this very easily using Bioperl.

You can parse in each yeast chromosome from a genbank file, and walk
through each ORF, for each pair of ORFs you can classify the intergenic
regions as tandem, convergent, divergent, and then use $seq->subseq() to
extract the sequence and write it out if you like.

-jason

On Sat, 3 May 2003, mlobo wrote:

> Is there any module to characterize all intergenic regions of S.
> cerevisiae ORFs into tandem, convergent, and divergent regions? What
> might be an efficient approach to do this?
>                        Thanks,
>                         Mark
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--
Jason Stajich
Duke University
jason at cgt.mc.duke.edu