[Bioperl-l] STDOUT write_seq

Guido Dieterich Guido.Dieterich at gbf.de
Thu May 8 09:59:34 EDT 2003


Hi,
i have a little problem with BioPerl. I want to write a Tk-program that 
shows a complete swissProt entry in a text widget.


my $gb = new Bio::DB::SwissProt();
my $seq1 = $gb->get_Seq_by_Acc($id);
my $seqOut = new Bio::SeqIO(-format=>'swiss');
$seqOut->write_seq($seq1);

The last line prints the swissprot entry in the dos-window, but I want 
to have the file in one variable, so that I later can insert it in a 
text-field of Tk?

How to get the stream ($seqOut->write_seq($seq1)) in a variable.
Thanks!
-- 
			
			
Dr. Guido Dieterich
Dipl.-Biologe										

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