[Bioperl-l] Reliable working version of Biosql

[Hilmar Lapp]

You'll need at least bioperl-1.2.1 (released), or the bioperl main trunk
from CVS, biosql main trunk from CVS, and bioperl-db main trunk from
CVS.

If you decide to go with bioperl-1.2.1, you'll need a patch. Let me know
and I'll send it you. (I've posted it before but yes, I need to commit
this patch ...) Don't let the patch discourage you; it's a very simple
one and 1.2.1 is a very good and stable version if you're not
comfortable living on the edge.

With the above version combination you should be OK. If you do get
errors from the bioperl-db test suite, post the output and I'll try and
help you until you're set. So far I've got everybody going who wanted
to.

	-hilmar

> -----Original Message-----
> From: Zayed Albertyn [mailto:zayed at sanbi.ac.za] 
> Sent: Monday, May 12, 2003 3:21 AM
> To: bioperl-l at bioperl.org
> Subject: [Bioperl-l] Reliable working version of Biosql
> 
> 
> HI there
> 
> I am trying to get the Biosql schema running on my local 
> mysql database but I have run into an incredible amount of 
> problems. I did recieve some help previously regarding what 
> versions of bioperl-live, bioperl-db and biosql to use but it 
> didnt help that my mysql installation didnt talk 'innodb'.
> 
> So, I have heard that a relatively stable version of biosql 
> will be/or has been released on linux that will work with 
> bioperl and its accessory modules. Could you please direct me 
> which versions of these to download (with which flags in CVS) 
> so that I can have some success in loading all my sequences 
> in a database and working with them without recieving a 
> multitude of perl error messages?
> 
> 
> 
> Many thanks in advance.
> 
> Zayed
> 
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