[Bioperl-l] SearchIO, last hit in blast report dropped

Hilmar Lapp hlapp at gnf.org
Sat May 24 17:58:54 EDT 2003


Can the fix be back-ported to the 1.2 branch?

I just committed a couple of ontologyIO-related fixes to both HEAD and 
stable branch. Nothing serious. Still, I think what has accumulated is 
worth targeting 1.2.2 before BOSC.

(translated to Viennese: des geht si'aus, wemma sehn!)

	-hilmar

On Saturday, May 24, 2003, at 05:53  AM, Jason Stajich wrote:

> As I already added to the bug report, this is already fixed on the main
> trunk code (what is in CVS).
>
> On Sat, 24 May 2003, claus vogl wrote:
>
>> Dear All,
>>
>> When parsing a blast report, SearchIO consistently misses the last 
>> hit.
>> Michael already pointed this out in a bug report. Is this problem 
>> fixed
>> by now? I would need this feature in shape for my work, because I 
>> often
>> have reports with just a single hit, which are now skipped entirely by
>> SearchIO.
>>
>> Baba (bye in Viennese dialect)
>>
>> Claus
>>
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>
> --
> Jason Stajich
> Duke University
> jason at cgt.mc.duke.edu
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>
-- 
-------------------------------------------------------------
Hilmar Lapp                            email: lapp at gnf.org
GNF, San Diego, Ca. 92121              phone: +1-858-812-1757
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