July 2006 Archives by author

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Starting: Mon Jul 3 12:41:33 UTC 2006
Ending: Tue Aug 1 02:59:30 UTC 2006
Messages: 314

[Bioperl-l] SearchIO - Stop throwing away data simon andrews (BI)
[Bioperl-l] New EMBL format parsing/writing simon andrews (BI)
[Bioperl-l] BLAST running options Vesselin Baev
[Bioperl-l] checkout_all fails on biodata Sendu Bala
[Bioperl-l] checkout_all fails on biodata Sendu Bala
[Bioperl-l] Bio::Map changes Sendu Bala
[Bioperl-l] Bio::Map changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Accessing TRANSFAC matrices Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::Species/Bio::Taxonomy changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::Species/Bio::Taxonomy changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] TRANSFAC matrices, open acces Sendu Bala
[Bioperl-l] TRANSFAC matrices, open acces Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] TRANSFAC matrices, open acces Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Sendu Bala
[Bioperl-l] Getting sequences by base pair locations Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Sendu Bala
[Bioperl-l] how to get annotations (especially ensembl IDs) for a list of genes? Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Sendu Bala
[Bioperl-l] Strangeness in parsing blast file Sendu Bala
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Sendu Bala
[Bioperl-l] $hit_object->frac_aligned_hit/$hit_object->frac_aligned_query Andreo Beck
[Bioperl-l] $hit_object->frac_aligned_hit/$hit_object->frac_aligned_query Andreo Beck
[Bioperl-l] whole genome annotation Richard Birnie
[Bioperl-l] whole genome annotation Richard Birnie
[Bioperl-l] whole genome annotation Richard Birnie
[Bioperl-l] parser for GeneSeqer Robert Buels
[Bioperl-l] FeatureIO tests failing on linux debian sarge Robert Buels
[Bioperl-l] bioperl pulls, xml parsers push, and things get complicated Robert Buels
[Bioperl-l] bioperl pulls, xml parsers push, and things get complicated Robert Buels
[Bioperl-l] bioperl pulls, xml parsers push, and things get complicated Robert Buels
[Bioperl-l] Installing staden io_lib on windows? Scott Cain
[Bioperl-l] remoteBlast problem Dongsheng Che
[Bioperl-l] Bio::Root::RootI->throw($msg,$class) overloading? Steve Chervitz
[Bioperl-l] parsing est2genome output Avril Coghlan
[Bioperl-l] Bio::Tools::Fgenesh bug? and fix? Cook, Malcolm
[Bioperl-l] Bio::Tools::Fgenesh bug? and fix? Cook, Malcolm
[Bioperl-l] Remote Blast - Blast Human Genome Cook, Malcolm
[Bioperl-l] TRANSFAC matrices, open acces Cook, Malcolm
[Bioperl-l] Getting sequences by base pair locations Cook, Malcolm
[Bioperl-l] checkout_all fails on biodata Mauricio Herrera Cuadra
[Bioperl-l] advice Mauricio Herrera Cuadra
[Bioperl-l] bioperl pulls, xml parsers push, and things get complicated Mauricio Herrera Cuadra
[Bioperl-l] Getting sequences by base pair locations Cui, Wenwu (NIH/NLM/NCBI) [C]
[Bioperl-l] TRANSFAC matrices, open acces Sean Davis
[Bioperl-l] whole genome annotation Sean Davis
[Bioperl-l] whole genome annotation Sean Davis
[Bioperl-l] Getting sequences by base pair locations Sean Davis
[Bioperl-l] Getting sequences by base pair locations Sean Davis
[Bioperl-l] Getting sequences by base pair locations Sean Davis
[Bioperl-l] PAML + Codeml problem.. Xianjun Dong
[Bioperl-l] Bio::Tools::Fgenesh bug? and fix? Christopher Dwan
[Bioperl-l] checkout_all fails on biodata Chris Fields
[Bioperl-l] checkout_all fails on biodata Chris Fields
[Bioperl-l] Bio::SearchIO::hmmer hsp behaviour Chris Fields
[Bioperl-l] parser for GeneSeqer Chris Fields
[Bioperl-l] parser for GeneSeqer Chris Fields
[Bioperl-l] FeatureIO tests failing on linux debian sarge Chris Fields
[Bioperl-l] Bio::SeqFeatureI spliced_seq Chris Fields
[Bioperl-l] BLAST running options Chris Fields
[Bioperl-l] How to use gi2taxonid Chris Fields
[Bioperl-l] Need help in needle parser Chris Fields
[Bioperl-l] Bio::Root::RootI->throw($msg,$class) overloading? Chris Fields
[Bioperl-l] Need help in needle parser Chris Fields
[Bioperl-l] Need help in needle parser Chris Fields
[Bioperl-l] Bio::Root::RootI->throw($msg,$class) overloading? Chris Fields
[Bioperl-l] Get nucleotide sequence when expecting protein fromgenpept Chris Fields
[Bioperl-l] Get nucleotide sequence when expecting proteinfromgenpept Chris Fields
[Bioperl-l] Bio::Root::RootI->throw($msg,$class) overloading? Chris Fields
[Bioperl-l] Get nucleotide sequence when expecting proteinfromgenpept Chris Fields
[Bioperl-l] Bio::Root::RootI->throw($msg,$class) overloading? Chris Fields
[Bioperl-l] remoteBlast problem Chris Fields
[Bioperl-l] Remote Blast - Blast Human Genome Chris Fields
[Bioperl-l] Finding locations of a string within a fasta file Chris Fields
[Bioperl-l] BLOSUM matrix Chris Fields
[Bioperl-l] advice Chris Fields
[Bioperl-l] advice Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Remote Blast - Blast Human Genome Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] advice Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::SeqIO::genbank and Bio::Species Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] bioperl pulls, xml parsers push, and things get complicated Chris Fields
[Bioperl-l] SearchIO HOWTO Chris Fields
[Bioperl-l] ListSummaries delay apologies Chris Fields
[Bioperl-l] bioperl pulls, xml parsers push, and things get complicated Chris Fields
[Bioperl-l] EMBL release 87 format changes. Chris Fields
[Bioperl-l] Features in SeqIO GenBank output Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Blast Output Parsing Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] installing bioperl Chris Fields
[Bioperl-l] Remote Blast - Blast Human Genome Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] PAML parser Chris Fields
[Bioperl-l] SNP reference file download Chris Fields
[Bioperl-l] obo_parser.t test warnings Chris Fields
[Bioperl-l] Bio::Species/Bio::Taxonomy changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::Species/Bio::Taxonomy changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] SearchIO - Stop throwing away data Chris Fields
[Bioperl-l] Making BioPerl Faster Chris Fields
[Bioperl-l] Remote Blast Execution Chris Fields
[Bioperl-l] New EMBL format parsing/writing Chris Fields
[Bioperl-l] New EMBL format parsing/writing Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::Species/Bio::Taxonomy changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::Species/Bio::Taxonomy changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] SNP reference file download Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Chris Fields
[Bioperl-l] Getting sequences by base pair locations Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Chris Fields
[Bioperl-l] Getting sequences by base pair locations Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Chris Fields
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Chris Fields
[Bioperl-l] Strangeness in parsing blast file Chris Fields
[Bioperl-l] advice Ryan Golhar
[Bioperl-l] advice Ryan Golhar
[Bioperl-l] Bio::Align::DNAStatistics module has errors? Ryan Golhar
[Bioperl-l] PAML + Codeml problem.. Ryan Golhar
[Bioperl-l] BLOSUM matrix Sudha Gunturu
[Bioperl-l] BLOSUM matrix Sudha Gunturu
[Bioperl-l] Accessing TRANSFAC matrices Maximilian Haeussler
[Bioperl-l] TRANSFAC matrices, open acces Maximilian Haeussler
[Bioperl-l] Strangeness in parsing blast file Nabil Hafez
[Bioperl-l] Strangeness in parsing blast file Nabil Hafez
[Bioperl-l] Strangeness in parsing blast file Nabil Hafez
[Bioperl-l] Strangeness in parsing blast file Nabil Hafez
[Bioperl-l] PAML parser Michael Han
[Bioperl-l] Walking multiple bioentries using bioperl-db Jay Hannah
[Bioperl-l] Anyone else at OSCON right now? Jay Hannah
[Bioperl-l] Finding locations of a string within a fasta file Charles Hauser
[Bioperl-l] Finding locations of a string within a fasta file Charles Hauser
[Bioperl-l] bioperl pulls, xml parsers push, and things get complicated Dave Howorth
[Bioperl-l] Getting sequences by base pair locations Yuval Itan
[Bioperl-l] Bio::SearchIO::hmmer hsp behaviour Selvi Kadirvel
[Bioperl-l] WUBLASTP parsing problem Angshu Kar
[Bioperl-l] Accessing TRANSFAC matrices Stefan Kirov
[Bioperl-l] Structure::IO Adam Kraut
[Bioperl-l] checkout_all fails on biodata Hilmar Lapp
[Bioperl-l] checkout_all fails on biodata Hilmar Lapp
[Bioperl-l] parser for GeneSeqer Hilmar Lapp
[Bioperl-l] parser for GeneSeqer Hilmar Lapp
[Bioperl-l] Bio::Root::RootI->throw($msg,$class) overloading? Hilmar Lapp
[Bioperl-l] Bio::Root::RootI->throw($msg,$class) overloading? Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] bioperl pulls, xml parsers push, and things get complicated Hilmar Lapp
[Bioperl-l] Walking multiple bioentries using bioperl-db Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::Species/Bio::Taxonomy changes Hilmar Lapp
[Bioperl-l] Bio::Species/Bio::Taxonomy changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::Species/Bio::Taxonomy changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::Species/Bio::Taxonomy changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes Hilmar Lapp
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Hilmar Lapp
[Bioperl-l] Working code Chris Larsen
[Bioperl-l] bioperl pulls, xml parsers push, and things get complicated Stephen Gordon Lenk
[Bioperl-l] Call For Birds of a Feather Suggestions Darin London
[Bioperl-l] obo_parser.t test warnings Sohel Merchant
[Bioperl-l] advice Barry Moore
[Bioperl-l] advice Barry Moore
[Bioperl-l] PrimarySeqI object Exception Brian Osborne
[Bioperl-l] Bio::*Taxonomy* changes Brian Osborne
[Bioperl-l] Bio::*Taxonomy* changes Brian Osborne
[Bioperl-l] SeqUtils Brian Osborne
[Bioperl-l] Structure::IO Brian Osborne
[Bioperl-l] Structure::IO Brian Osborne
[Bioperl-l] Bio::*Taxonomy* changes Brian Osborne
[Bioperl-l] whole genome annotation Brian Osborne
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Brian Osborne
[Bioperl-l] Features in SeqIO GenBank output Georg Otto
[Bioperl-l] Features in SeqIO GenBank output Georg Otto
[Bioperl-l] Get nucleotide sequence when expecting protein from genpept Frederick Partridge
[Bioperl-l] Get nucleotide sequence when expecting proteinfromgenpept Frederick Partridge
[Bioperl-l] Course announcement: CSHL Computational Genomics Course William R. Pearson
[Bioperl-l] How to use gi2taxonid Hubert Prielinger
[Bioperl-l] Get nucleotide sequence when expecting protein from genpept Qunfeng
[Bioperl-l] Blast Output Parsing Prabu R
[Bioperl-l] Blast Output Parsing Prabu R
[Bioperl-l] Remote Blast Execution Prabu R
[Bioperl-l] Making BioPerl Faster Al Ramsey
[Bioperl-l] PrimarySeqI object Exception CHANDAN SINGH
[Bioperl-l] TRANSFAC matrices, open acces Remo Sanges
[Bioperl-l] installing bioperl Matthew A. Saunders
[Bioperl-l] installing bioperl Matthew A. Saunders
[Bioperl-l] BLOSUM matrix Torsten Seemann
[Bioperl-l] Finding locations of a string within a fasta file Torsten Seemann
[Bioperl-l] advice Torsten Seemann
[Bioperl-l] advice Torsten Seemann
[Bioperl-l] Strangeness in parsing blast file Torsten Seemann
[Bioperl-l] PDB file parser (Separates chain-sequence and chain-structure) Animesh Sharma
[Bioperl-l] Bio::Align::DNAStatistics module has errors? Jason Stajich
[Bioperl-l] Bio::Root::RootI->throw($msg,$class) overloading? Steve_Chervitz
[Bioperl-l] Bio::Root::RootI->throw($msg,$class) overloading? Steve_Chervitz
[Bioperl-l] #bioperl Andrew Stewart
[Bioperl-l] Need help in needle parser Khoiwal Tara
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Gabriel Valiente
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Gabriel Valiente
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Gabriel Valiente
[Bioperl-l] Bio::*Taxonomy* changes (Chris Fields) Gabriel Valiente
[Bioperl-l] SearchIO - Stop throwing away data Jayne Vallance
[Bioperl-l] Bio::Root::RootI->throw($msg,$class) overloading? Rutger Vos
[Bioperl-l] Bio::Root::RootI->throw($msg,$class) overloading? Rutger Vos
[Bioperl-l] SearchIO HOWTO Bernd Web
[Bioperl-l] Structure::IO Bernd Web
[Bioperl-l] SeqUtils Bernd Web
[Bioperl-l] Structure::IO Bernd Web
[Bioperl-l] Fwd: Re: BioPerl query ong at embl.de
[Bioperl-l] bioperl pulls, xml parsers push, and things get complicated aaron.j.mackey at gsk.com
[Bioperl-l] Installing staden io_lib on windows? aaron.j.mackey at gsk.com
[Bioperl-l] Accessing TRANSFAC matrices Morissard jérome
[Bioperl-l] Accessing TRANSFAC matrices leverdeterre
[Bioperl-l] Blast Output Parsing leverdeterre
[Bioperl-l] Accessing TRANSFAC matrices leverdeterre
[Bioperl-l] how to get annotations (especially ensembl IDs) for a list of genes? zhihua li
[Bioperl-l] PrimarySeqI object Exception sss lll
[Bioperl-l] EMBL release 87 format changes. dwaner at scitegic.com
[Bioperl-l] New EMBL format parsing/writing dwaner at scitegic.com
[Bioperl-l] advice raj sharma
[Bioperl-l] advice raj sharma
[Bioperl-l] TRANSFAC matrices, open acces skirov
[Bioperl-l] TRANSFAC matrices, open acces skirov
[Bioperl-l] Remote Blast - SNP data base vrramnar at student.cs.uwaterloo.ca
[Bioperl-l] Remote Blast - Blast Human Genome vrramnar at student.cs.uwaterloo.ca
[Bioperl-l] Remote Blast - Blast Human Genome vrramnar at student.cs.uwaterloo.ca
[Bioperl-l] Remote Blast - Blast Human Genome vrramnar at student.cs.uwaterloo.ca
[Bioperl-l] SNP reference file download vrramnar at student.cs.uwaterloo.ca
[Bioperl-l] SNP reference file download vrramnar at student.cs.uwaterloo.ca

Last message date: Tue Aug 1 02:59:30 UTC 2006
Archived on: Mon Jun 16 02:47:23 UTC 2014

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