[Bioperl-l] Bio::Align::DNAStatistics module has errors?
Jason Stajich
jason.stajich at duke.edu
Sat Jul 29 05:18:50 UTC 2006
I think that msg was CYA by me at some point - I am pretty sure I
made tests based on numbers from PHYLIP and EMBOSS but was hoping for
someone else to help. At this point I have no reliable time to
really work on, but I hope someone who is interested in it will give
it a whirl. There may be some boundary cases that don't work where
seqs are too short or have a zero number of a particular nt but in
general the nums should jive. I am not sure about all the NG Ks and
Ka as I didn't write those but I believe Richard vetted them pretty
well first.
There are a couple of methods not implemented too - am always hopeful
other people will see this as a great starting point and roll up
their sleeves to join in...
-jason
--
Jason Stajich
Duke University
http://www.duke.edu/~jes12
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