2000-December Archives by Thread

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Starting: Fri Dec 1 08:21:06 2000
Ending: Fri Dec 29 13:38:11 2000
Messages: 254

• [Bioperl-l] 0.7 release: tasks & assignments   Ewan Birney
• [Bioperl-l] Bio::SeqIO::game   Ewan Birney
• [Bioperl-l] 0.7 release: tasks & assignments   Kris Boulez
• SUCCESS! Re: [Bioperl-l] wincvs   Matthew Pocock
  • SUCCESS! Re: [Bioperl-l] wincvs   Mark Wilkinson
    • SUCCESS! Re: [Bioperl-l] wincvs   Matthew Pocock
      • SUCCESS! Re: [Bioperl-l] wincvs   Mark Wilkinson
• [Bioperl-l] Testing 0.7 on NT   Shailesh L Mistry
• [Bioperl-l] Bio::SeqIO::game   Bradley Marshall
  • [Bioperl-l] Bio::SeqIO::game   Ewan Birney
• [Bioperl-l] Bio::DB::WebDB   Jason Stajich
• [Bioperl-l] Bio::SeqIO::game   Bradley Marshall
  • [Bioperl-l] Bio::SeqIO::game   Ewan Birney
• [Bioperl-l] somethin' strange about RootI?   Mark Wilkinson
  • [Bioperl-l] somethin' strange about RootI?   Hilmar Lapp
  • [Bioperl-l] somethin' strange about RootI   Jason Stajich
• [Bioperl-l] Gene Interface?   Ewan Birney
  • [Bioperl-l] Gene Interface?   Hilmar Lapp
• [Bioperl-l] Bio::SeqIO::game   Bradley Marshall
  • [Bioperl-l] Bio::SeqIO::game   Matthew Pocock
• [Bioperl-l] bioperl/bioxml/biojava now have web browsable CVS access   chris dagdigian
• [Bioperl-l] Re: BPLite   Elia Stupka
  • [Bioperl-l] Re: BPLite   Ewan Birney
• [Bioperl-l] Fuzzy location parsing   gert thijs
  • [Bioperl-l] Fuzzy location parsing   Hilmar Lapp
• [Bioperl-l] proposal Bio::SeqIO::largefasta   Jason Stajich
  • [Bioperl-l] proposal Bio::SeqIO::largefasta   Hilmar Lapp
• [Bioperl-l] Bio::PrimarySeq _guess_type   Jason Stajich
  • [Bioperl-l] Bio::PrimarySeq _guess_type   Ewan Birney
• [Bioperl-l] added Bio::SeqIO::largefasta   Jason Stajich
  • [Bioperl-l] added Bio::SeqIO::largefasta   Hilmar Lapp
    • [Bioperl-l] added Bio::SeqIO::largefasta   Jason Stajich
  • [Bioperl-l] added Bio::SeqIO::largefasta   Ewan Birney
• [Bioperl-l] computation object   Fiers, M.W.E.J.
  • [Bioperl-l] computation object   Matthew Pocock
• [Bioperl-l] bioperl or perl module can perform SQL-like query on XML files   Zhao, David [PRI]
  • [Bioperl-l] bioperl or perl module can perform SQL-like query on XML files   Paul Gordon
• [Bioperl-l] bug #868   Jason Stajich
• [Bioperl-l] faculty position available   Tony Kusalik
  • [Bioperl-l] faculty position available   Ewan Birney
    • [Bioperl-l] faculty position available   Matthew Pocock
• [Bioperl-l] Bio::Object   Jason Stajich
  • [Bioperl-l] Bio::Object   Paul Gordon
• [Bioperl-l] Re: Bio::DB::WebSeqDB   Hilmar Lapp
• [Bioperl-l] Changes to the wiki-enabled portions of our website(s)   Chris Dagdigian
• [Bioperl-l] Hello, Newbie Questions   John van V
• [Bioperl-l] An open letter to bioinformatcis researchers   Ewan Birney
• [Bioperl-l] Update on Don Kennedy's address.   Ewan Birney
• [Bioperl-l] An open letter to bioinformatcis researchers   Paul Gordon
• [Bioperl-l] RE: An open letter to bioinformatcis researchers   Jean-Marc Neefs
• [Bioperl-l] LiveSeq   Ewan Birney
  • [Bioperl-l] LiveSeq   Hilmar Lapp
  • [Bioperl-l] LiveSeq   Heikki Lehvaslaiho
• [Bioperl-l] Problems with revcom and translate in PrimarySeqI   David Block
  • [Bioperl-l] Problems with revcom and translate in PrimarySeqI   Ewan Birney
    • [Bioperl-l] Problems with revcom and translate in PrimarySeqI   Jason Stajich
      • [Bioperl-l] Problems with revcom and translate in PrimarySeqI   Hilmar Lapp
      • [Bioperl-l] Bio::SeqIO::embl probelms reading swissprot   Murad Nayal
      • [Bioperl-l] Bio::SeqIO::embl problems reading swissprot clarification   Murad Nayal
      • [Bioperl-l] Bio::SeqIO::embl probelms reading swissprot   Hilmar Lapp
      • [Bioperl-l] Bio::SeqIO::embl problems reading swissprot clarification   Hilmar Lapp
      • [Bioperl-l] Alignment::Clustalw and Bio::RootI   Murad Nayal
      • [Bioperl-l] Alignment::Clustalw and Bio::RootI   Jason Stajich
      • [Bioperl-l] Alignment::Clustalw and Bio::RootI   Murad Nayal
      • [Bioperl-l] Alignment::Clustalw and Bio::RootI   Hilmar Lapp
      • [Bioperl-l] Alignment::Clustalw and Bio::RootI   Murad Nayal
      • [Bioperl-l] Alignment::Clustalw and Bio::RootI   Jason Stajich
      • [Bioperl-l] Bio::SeqIO::embl problems reading swissprot clarification   Ewan Birney
      • [Bioperl-l] Problems with revcom and translate in PrimarySeqI   David Block
• [Bioperl-l] revcom/translate fix   David Block
• [Bioperl-l] final proposal: Bio::DB::WebSeqDBI   Jason Stajich
  • [Bioperl-l] final proposal: Bio::DB::WebSeqDBI   David Block
  • [Bioperl-l] final proposal: Bio::DB::WebSeqDBI   Hilmar Lapp
    • [Bioperl-l] final proposal: Bio::DB::WebSeqDBI   Jason Stajich
  • [Bioperl-l] final proposal: Bio::DB::WebSeqDBI   Ewan Birney
• [Bioperl-l] game.pm filehandle/chunkable update   Bradley Marshall
  • [Bioperl-l] game.pm filehandle/chunkable update   Hilmar Lapp
• [BioXML-dev] Re: [Bioperl-l] game.pm filehandle/chunkable update   Bradley Marshall
• [Bioperl-l] Re: Bio::DB::WebSeqDB and Bio::DB::GenBank   Hilmar Lapp
  • [Bioperl-l] Re: Bio::DB::WebSeqDB and Bio::DB::GenBank   Francis Ouellette
    • [Bioperl-l] Re: Bio::DB::WebSeqDB and Bio::DB::GenBank   Jason Stajich
  • [Bioperl-l] Re: Bio::DB::WebSeqDB and Bio::DB::GenBank   Paul Gordon
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/872   Hilmar Lapp
• [Bioperl-l] LiveSeq committed modules   Joseph Insana
  • [Bioperl-l] LiveSeq committed modules   Hilmar Lapp
• [Bioperl-l] Re: Bio::DB::WebSeqDB and Bio::DB::GenBank   Geer, Lewis (NCBI)
  • [Bioperl-l] GenBank XML report format & DTD   Hilmar Lapp
• [Bioperl-l] Bio::DB::WebDBSeqI   Jason Stajich
  • [Bioperl-l] Bio::DB::WebDBSeqI   Aaron J Mackey
  • [Bioperl-l] Bio::DB::WebDBSeqI   Hilmar Lapp
    • [Bioperl-l] Bio::DB::WebDBSeqI   Jason Stajich
    • [Bioperl-l] Bio::DB::WebDBSeqI   David Block
    • [Bioperl-l] Bio::DB::WebDBSeqI   Malcolm Cook
      • [Bioperl-l] Bio::DB::WebDBSeqI   Ewan Birney
    • [Bioperl-l] External dependencies [was Bio::DB::WebDBSeqI]   Todd Richmond
      • [Bioperl-l] External dependencies [was Bio::DB::WebDBSeqI]   Ewan Birney
      • [Bioperl-l] External dependencies [was Bio::DB::WebDBSeqI]   Hilmar Lapp
      • [Bioperl-l] External dependencies and Macs [long]   Todd Richmond
      • [Bioperl-l] External dependencies and Macs [long]   Ewan Birney
      • [Bioperl-l] External dependencies and Macs [long]   Todd Richmond
    • [Bioperl-l] Bio::DB::WebDBSeqI   Kris Boulez
• [Bioperl-l] RE: GenBank XML report format & DTD   Geer, Lewis (NCBI)
  • [Bioperl-l] Re: GenBank XML report format & DTD   Hilmar Lapp
• [Bioperl-l] (no subject)   Strassel, Chris
  • [Bioperl-l] (no subject)   Jason Stajich
• [Bioperl-l] Bio::DB::WebDBSeqI   Osborne, Brian
  • [Bioperl-l] Bio::DB::WebDBSeqI   Hilmar Lapp
• [Bioperl-l] external module dependencies in bioperl (was Re: [Bioperl-l] Bio::DB::WebDBSeqI)   chris dagdigian
• [Bioperl-l] Genomics Gets a New Code: GEML   Eugene.Leitl@lrz.uni-muenchen.de
• [Bioperl-l] Celera deal   Jean-Marc BONNEVILLE
• [Bioperl-l] Bio::DB::WebDBSeqI   Osborne, Brian
  • [Bioperl-l] Bio::DB::WebDBSeqI   Kris Boulez
• [Bioperl-l] Celera deal   Osborne, Brian
• [Bioperl-l] XBLAST replacement?   Jonathan Epstein
• [Bioperl-l] Re: GenBank XML report format & DTD   Geer, Lewis (NLM/NCBI)
• [Bioperl-l] Developing Improved Bioperl Documentation   Peter Schattner
  • [Bioperl-l] Re: Developing Improved Bioperl Documentation   Kris Boulez
    • [Bioperl-l] Re: Developing Improved Bioperl Documentation   Peter Schattner
      • [Bioperl-l] Re: Developing Improved Bioperl Documentation   Hilmar Lapp
      • [Bioperl-l] Re: Developing Improved Bioperl Documentation   Kris Boulez
      • [Bioperl-l] Re: Developing Improved Bioperl Documentation   Peter Schattner
• [Bioperl-l] Gene Interface discussion   Ewan Birney
• [Bioperl-l] Computation.pm   Fiers, M.W.E.J.
  • [Bioperl-l] Computation.pm   Hilmar Lapp
    • [Bioperl-l] Computation.pm   Ewan Birney
• [Bioperl-l] Genomics Gets a New Code: GEML   David Lapointe
• [Bioperl-l] Computation.pm   Fiers, M.W.E.J.
  • [Bioperl-l] Computation.pm   Hilmar Lapp
• [Bioperl-l] Re: [Bioperl-guts-l] bioperl-live MANIFEST file mismatch (Bio/liveseq/Analyser.pm)   Hilmar Lapp
• [Bioperl-l] Computation.pm   Fiers, M.W.E.J.
  • [Bioperl-l] Computation.pm   Chris Mungall
• [Bioperl-l] Re: External dependencies and Macs   Marc Colosimo
  • [Bioperl-l] Re: External dependencies and Macs   Hilmar Lapp
    • [Bioperl-l] Re: External dependencies and Macs   Marc Colosimo
• [Bioperl-l] newbie question   Martin Schmidt
  • [Bioperl-l] newbie question   Hilmar Lapp
  • [Bioperl-l] newbie question   vastrik@mappi.helsinki.fi
• [Bioperl-l] new dependency on XML::Node in bioperl-live?   Chris Dagdigian
  • [Bioperl-l] new dependency on XML::Node in bioperl-live?   Heikki Lehvaslaiho
• [Bioperl-l] coming soon: Bundle::BioPerl   Chris Dagdigian
• [Bioperl-l] Bioperl NT update   Shailesh L Mistry
  • [Bioperl-l] Bioperl NT update   Hilmar Lapp
    • [Bioperl-l] Bioperl NT update   Peter Schattner
      • [Bioperl-l] Bioperl NT update   Hilmar Lapp
      • [Bioperl-l] Bioperl NT update   J.C. Diggans
      • [Bioperl-l] Bioperl NT update   Peter Schattner
      • [Bioperl-l] Bioperl NT update   Ewan Birney
      • [Bioperl-l] printing UnivAlgn   Murad Nayal
      • [Bioperl-l] printing UnivAlgn   Peter Schattner
      • [Bioperl-l] printing UnivAlgn   Murad Nayal
      • [Bioperl-l] printing UnivAlgn   Ewan Birney
      • [Bioperl-l] printing UnivAlgn   Murad Nayal
      • [Bioperl-l] printing UnivAlgn   Murad Nayal
      • [Bioperl-l] printing UnivAlgn   Ewan Birney
      • [Bioperl-l] printing UnivAlgn   Murad Nayal
      • [Bioperl-l] printing UnivAlgn   Peter Schattner
      • [Bioperl-l] printing UnivAlgn   Murad Nayal
      • [Bioperl-l] printing UnivAlgn   Ewan Birney
      • [Bioperl-l] printing UnivAlgn   Hilmar Lapp
      • [Bioperl-l] OT: List of bio software online?   Clay Shirky
      • [Bioperl-l] Bioperl NT update   Hilmar Lapp
      • [Bioperl-l] Bioperl NT update   Jason Stajich
      • [Bioperl-l] Bioperl NT update   Hilmar Lapp
      • [Bioperl-l] Bioperl NT update   Shailesh L Mistry
      • [Bioperl-l] Bioperl NT update   Shailesh L Mistry
• [Bioperl-l] script to visit biosite question   Brian Tam
• [Bioperl-l] script to visit biosite question   Brian Tam
  • [Bioperl-l] script to visit biosite question   Hilmar Lapp
• [Bioperl-l] Parsing fuzzy locations   Strassel, Chris
  • [Bioperl-l] Parsing fuzzy locations   Hilmar Lapp
  • [Bioperl-l] Parsing fuzzy locations   Mark Dalphin
    • [Bioperl-l] Parsing fuzzy locations   Matthew Pocock
  • [Bioperl-l] Parsing fuzzy locations   Ewan Birney
  • [Bioperl-l] Parsing fuzzy locations   Keith James
• [Bioperl-l] Bio::SeqFeatureProducer   Jason Stajich
• [Bioperl-l] Bioperl NT update   Todd Richmond
• [Bioperl-l] help needed   govind mk
• [Bioperl-l] back to the grind of 0.7   Ewan Birney
  • [Bioperl-l] back to the grind of 0.7   Heikki Lehvaslaiho
  • [Bioperl-l] back to the grind of 0.7   Hilmar Lapp
• [Bioperl-l] wow - external dependencies   Ewan Birney
• [Bioperl-l] help test Bundle::BioPerl   Chris Dagdigian
• [Bioperl-l] PrimarySeq, Seq fixes   Ewan Birney
  • [Bioperl-l] PrimarySeq, Seq fixes   Jason Stajich
• [Bioperl-l] help test Bundle::BioPerl   chris dagdigian
• [Bioperl-l] PrimarySeq, Seq fixes   Todd Richmond
  • [Bioperl-l] PrimarySeq, Seq fixes   Joel Martin
• [Bioperl-l] Variation_IO.t [was: External dependencies]   Heikki Lehvaslaiho
  • [Bioperl-l] Variation_IO.t [was: External dependencies]   Jason Stajich
    • [Bioperl-l] Variation_IO.t [was: External dependencies]   Ewan Birney
      • [Bioperl-l] Variation_IO.t [was: External dependencies]   Jason Stajich
      • [Bioperl-l] Variation_IO.t [was: External dependencies]   Heikki Lehvaslaiho
• [Bioperl-l] Bad news for 5.0004 compatibility   Ewan Birney
  • [Bioperl-l] tempfile creation and Bio::Tools::Run   Jason Stajich
    • [Bioperl-l] Re: tempfile creation and Bio::Tools::Run   Ewan Birney
    • [Bioperl-l] tempfile creation and Bio::Tools::Run   Peter Schattner
      • [Bioperl-l] tempfile creation and Bio::Tools::Run   Jason Stajich
      • [Bioperl-l] Bio::Tools::Run   Hilmar Lapp
      • [Bioperl-l] tempfile creation and Bio::Tools::Run   Murad Nayal
  • [Bioperl-l] Bad news for 5.0004 compatibility   Hilmar Lapp
• [Bioperl-l] Compatibility testing.   Ewan Birney
• [Bioperl-l] Bio::Seq::GenEMBLI proposal   Ewan Birney
  • [Bioperl-l] Bio::Seq::GenEMBLI proposal   Hilmar Lapp
    • [Bioperl-l] Bio::Seq::GenEMBLI proposal   Ewan Birney
      • [Bioperl-l] Bio::Seq::GenEMBLI proposal   Hilmar Lapp
      • [Bioperl-l] Bio::Seq::GenEMBLI proposal   Ewan Birney
      • [Bioperl-l] Bio::Seq::GenEMBLI proposal   Hilmar Lapp
      • [Bioperl-l] Bio::Seq::GenEMBLI proposal   Jason Stajich
  • [Bioperl-l] Bio::Seq::GenEMBLI proposal   Paul Gordon
    • [Bioperl-l] Bio::Seq::GenEMBLI proposal   Ewan Birney
      • [Bioperl-l] Bio::Seq::GenEMBLI proposal   Paul Gordon
      • [Bioperl-l] Bio::Seq::GenEMBLI proposal   Matthew Pocock
• [Bioperl-l] Bio::Tools::HMMER refactoring   Ewan Birney
  • [Bioperl-l] Bio::Tools::HMMER refactoring   Hilmar Lapp
    • [Bioperl-l] Bio::Tools::HMMER refactoring   Ewan Birney
      • [Bioperl-l] Bio::SeqAnalysisParserI [was: Bio::Tools::HMMER refactoring]   Hilmar Lapp
      • [Bioperl-l] Bio::SeqAnalysisParserI [was: Bio::Tools::HMMER refactoring]   Ewan Birney
      • [Bioperl-l] Bio::SeqAnalysisParserI [was: Bio::Tools::HMMER refactoring]   Jason Stajich
• [Bioperl-l] migrated modules to a run dir   Jason Stajich
• [Bioperl-l] Seq(IO) documentation thoughts   Kris Boulez
  • [Bioperl-l] Seq(IO) documentation thoughts   Ewan Birney
    • [Bioperl-l] Seq(IO) documentation thoughts   Kris Boulez
  • [Bioperl-l] Seq(IO) documentation thoughts   Hilmar Lapp
    • [Bioperl-l] Seq(IO) documentation thoughts   Ewan Birney
      • [Bioperl-l] Seq(IO) documentation thoughts   Hilmar Lapp
      • [Bioperl-l] Seq(IO) documentation thoughts   Kris Boulez
• [Bioperl-l] 5.004 falling down   Ewan Birney
  • [Bioperl-l] 5.004 falling down   Jason Stajich
• [Bioperl-l] Database Management System   Lt Zhong
  • [Bioperl-l] Database Management System   David Block
• [Bioperl-l] Bioperl Documentation (PrimarySeq)   Marc Colosimo
  • [Bioperl-l] Bioperl Documentation (PrimarySeq)   Jason Stajich
  • [Bioperl-l] Bioperl Documentation (PrimarySeq)   Hilmar Lapp
• [Bioperl-l] Empty FASTA files with Bio::SeqIO   J.C. Diggans
  • [Bioperl-l] Empty FASTA files with Bio::SeqIO   Hilmar Lapp
    • [Bioperl-l] Empty FASTA files with Bio::SeqIO   J.C. Diggans
      • [Bioperl-l] Empty FASTA files with Bio::SeqIO   Hilmar Lapp
      • [Bioperl-l] Empty FASTA files with Bio::SeqIO   Aaron J Mackey
      • [Bioperl-l] Empty FASTA files with Bio::SeqIO   Hilmar Lapp
      • [Bioperl-l] Empty FASTA files with Bio::SeqIO   Aaron J Mackey
• [Bioperl-l] SeqIO (stress) testing   Kris Boulez
  • [Bioperl-l] SeqIO (stress) testing   Hilmar Lapp
    • [Bioperl-l] SeqIO (stress) testing   Kris Boulez
      • [Bioperl-l] SeqIO (stress) testing   Hilmar Lapp
      • [Bioperl-l] SeqIO (stress) testing   Hilmar Lapp
• [Bioperl-l] Re: SeqIO bug report   Hilmar Lapp
  • [Bioperl-l] Re: SeqIO bug report   Kris Boulez
    • [Bioperl-l] Re: SeqIO bug report   Hilmar Lapp
      • [Bioperl-l] Re: SeqIO bug report   Kris Boulez
• [Bioperl-l] Exceptions thrown when parsing embl format   Rob Ewing
  • [Bioperl-l] Exceptions thrown when parsing embl format   Ewan Birney
• [Bioperl-l] Different File Formats   Marc Colosimo
• [Bioperl-l] Different File Formats   Strassel, Chris
• [Bioperl-l] Bio::DB::*   Hilmar Lapp

Last message date: Fri Dec 29 13:38:11 2000
Archived on: Mon Mar 5 18:01:29 2001

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