[Bioperl-l] PrimarySeq, Seq fixes

[Joel Martin]

For windowws NT 4 using activestate perl buil 522 (5.003) this is
creating the tempfile in the root of the system disk, disregarding
what I've set for TEMP and TMP.

joel
lbnl, jgi, doe and pga informatics drone

At 06:57 PM 12/15/00 -0800, you wrote:
>On 12/15/00 2:08 PM, "Jason Stajich" <jason@chg.mc.duke.edu> wrote:
>
> > After reading some more IO documentation I realized
> > there are some other options:
> >
> > solution 1:
> > remove Tempfile creation,
> > replace line to wrap $tfh into FileHandle with the following:
> >
> >    my $fh = IO::File->new_tmpfile();
> >
> > Not sure if this work on Win32 or Mac and I'm not sure where the
> > temporary file is stored exactly so I'm guessing its not the best
> > solution...
> >
>
>This works fine on Macs. As for temporary file storage - we have the ability
>to specify a TMPDIR in the MacPerl preferences. In fact it's specified by
>default as the MacOS's temporary folder. I would assume this is where temp
>files are stored.
>
>--
>Dr Todd Richmond                 http://cellwall.stanford.edu/todd
>Carnegie Institution             email: todd@andrew2.stanford.edu
>Department of Plant Biology      fax: 1-650-325-6857
>260 Panama Street                phone: 1-650-325-1521 x431
>Stanford, CA 94305
>
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