2001-January Archives by Thread

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Starting: Tue Jan 2 12:52:57 2001
Ending: Wed Jan 31 23:08:20 2001
Messages: 240

• [Bioperl-l] Computation object   Fiers, M.W.E.J.
• [Bioperl-l] call for more tests   Jason Stajich
  • [Bioperl-l] call for more tests   Peter Schattner
  • [Bioperl-l] Initial draft of bioperl tutorial committed   Peter Schattner
    • [Bioperl-l] Initial draft of bioperl tutorial committed   Heikki Lehvaslaiho
      • [Bioperl-l] Initial draft of bioperl tutorial committed   Heikki Lehvaslaiho
    • [Bioperl-l] Initial draft of bioperl tutorial committed   Heikki Lehvaslaiho
• [Bioperl-l] test framework   Jason Stajich
  • [Bioperl-l] test framework   Heikki Lehvaslaiho
• [Bioperl-l] SWISS-PROT writing   Kris Boulez
  • [Bioperl-l] SWISS-PROT writing   Hilmar Lapp
    • [Bioperl-l] SWISS-PROT writing   Kris Boulez
      • [Bioperl-l] SWISS-PROT writing   Hilmar Lapp
      • [Bioperl-l] SWISS-PROT writing   Ewan Birney
      • [Bioperl-l] SWISS-PROT writing   Kris Boulez
      • [Bioperl-l] SWISS-PROT writing   Ewan Birney
      • [Bioperl-l] SWISS-PROT writing   Hilmar Lapp
• [Bioperl-l] A couple of CVS questions.   Peter Schattner
  • [Bioperl-l] A couple of CVS questions.   Hilmar Lapp
    • [Bioperl-l] A couple of CVS questions.   Jason Stajich
      • [Bioperl-l] A couple of CVS questions.   Ewan Birney
      • [Bioperl-l] A couple of CVS questions.   Hilmar Lapp
      • [Bioperl-l] A couple of CVS questions.   Ewan Birney
      • [Bioperl-l] A couple of CVS questions.   Hilmar Lapp
  • [Bioperl-l] A couple of CVS questions.   Chris Dagdigian
• [Bioperl-l] named parameters   Jason Stajich
  • [Bioperl-l] named parameters   Ewan Birney
  • [Bioperl-l] named parameters   Hilmar Lapp
• [Bioperl-l] test failures on main trunk   Ewan Birney
  • [Bioperl-l] test failures on main trunk   Ewan Birney
• [Bioperl-l] RootI migration and other changes   Jason Stajich
• [Bioperl-l] Bio::Tools::Blast;   Fish Fish
• [Bioperl-l] make test   Hilmar Lapp
  • [Bioperl-l] Re: make test   Heikki Lehvaslaiho
    • [Bioperl-l] Re: make test   Joseph Insana
      • [Bioperl-l] Re: make test   Jason Stajich
      • [Bioperl-l] Re: make test   Joseph Insana
      • [Bioperl-l] Re: make test   Ewan Birney
      • [Bioperl-l] Re: make test   Hilmar Lapp
      • [Bioperl-l] Re: make test   Heikki Lehvaslaiho
      • [Bioperl-l] Re: make test   Ewan Birney
      • [Bioperl-l] Re: make test   Hilmar Lapp
      • [Bioperl-l] Re: make test   Hilmar Lapp
• [Bioperl-l] ORF identification/prediction   Jason Stajich
  • [Bioperl-l] ORF identification/prediction   Hilmar Lapp
  • [Bioperl-l] ORF identification/prediction   Fernan Aguero
    • [Bioperl-l] EMBOSS -h Was : ORF identification/prediction   nirav@public.arl.Arizona.EDU
• [Bioperl-l] [Poop-group] RELEASE: Alzabo 0.20 (fwd)   David Block
• [Bioperl-l] bptutorial   Ewan Birney
• [Bioperl-l] spoke too soon...   Ewan Birney
  • [Bioperl-l] spoke too soon...   Jason Stajich
• [Bioperl-l] make tests   Joseph Insana
  • [Bioperl-l] make tests   Aaron J Mackey
    • [Bioperl-l] make tests   Joseph Insana
• [Bioperl-l] Bio::SearchDist, Bio::Ext::Align   Hilmar Lapp
  • [Bioperl-l] Re: Bio::SearchDist, Bio::Ext::Align   Ewan Birney
• [Bioperl-l] three letter codes for amino acids?   Heikki Lehvaslaiho
  • [Bioperl-l] three letter codes for amino acids?   Ewan Birney
  • [Bioperl-l] three letter codes for amino acids?   Hilmar Lapp
    • [Bioperl-l] three letter codes for amino acids?   Heikki Lehvaslaiho
• [Bioperl-l] Bio::SeqIO::genbank.pm   gert thijs
  • [Bioperl-l] Bio::SeqIO::genbank.pm   Hilmar Lapp
• [Bioperl-l] Re: Initial draft of bioperl tutorial committed   Lorrie LeJeune
  • [Bioperl-l] Re: Initial draft of bioperl tutorial committed   Peter Schattner
• [Bioperl-l] Emerging from obscurity   Paul-Christophe Varoutas
  • [Bioperl-l] Emerging from obscurity   Jason Stajich
• [Bioperl-l] three letter codes for amino acids?   Heikki Lehvaslaiho
  • [Bioperl-l] three letter codes for amino acids?   Heikki Lehvaslaiho
• [Bioperl-l] looking for datafile parsers   Andrew Dalke
  • [Bioperl-l] looking for datafile parsers   Aaron J Mackey
  • [Bioperl-l] Re: [Biojava-l] looking for datafile parsers   Simon Brocklehurst
• [Bioperl-l] RootI detachment proposal.   Ewan Birney
  • [Bioperl-l] RootI detachment proposal.   Hilmar Lapp
    • [Bioperl-l] RootI detachment proposal.   Ewan Birney
  • [Bioperl-l] RootI detachment proposal.   Jason Stajich
    • [Bioperl-l] RootI detachment proposal.   Heikki Lehvaslaiho
      • [Bioperl-l] RootI detachment proposal.   Ewan Birney
• [Bioperl-l] refactoring RootI   Ewan Birney
  • [Bioperl-l] refactoring RootI   Hilmar Lapp
    • [Bioperl-l] refactoring RootI   Jason Stajich
• [Bioperl-l] Exciting New Nutraceutical Company- Promote your own ideas!   dsokol@osnut.com
• [Bioperl-l] Molecular weight calculations   Peter Schattner
• [Bioperl-l] Re: pSW problem   Ewan Birney
• [Bioperl-l] updated   Ewan Birney
  • [Bioperl-l] Status 0.7   Hilmar Lapp
    • [Bioperl-l] Status 0.7   Jason Stajich
• [Bioperl-l] Refactor mercilessly   Hilmar Lapp
  • [Bioperl-l] Refactor mercilessly   Jason Stajich
• [Bioperl-l] what to do about Blast.pm, parsing   Jason Stajich
  • [Bioperl-l] what to do about Blast.pm, parsing   Aaron J Mackey
• [Bioperl-l] Map Manipulation and Genetic Analysis   Eric Snyder
  • [Bioperl-l] Map Manipulation and Genetic Analysis   Jason Stajich
• [Bioperl-l] BPlite bug   Imre Vastrik
• [Bioperl-l] split seq feature and fuzzy feature proposal   Jason Stajich
  • [Bioperl-l] split seq feature and fuzzy feature proposal   Hilmar Lapp
    • [Bioperl-l] split seq feature and fuzzy feature proposal   Jason Stajich
      • [Bioperl-l] split seq feature and fuzzy feature proposal   Hilmar Lapp
      • [Bioperl-l] split seq feature and fuzzy feature proposal   Ewan Birney
      • [Bioperl-l] split seq feature and fuzzy feature proposal   Hilmar Lapp
      • [Bioperl-l] split seq feature and fuzzy feature proposal   gert thijs
      • [Bioperl-l] split seq feature and fuzzy feature proposal   Ewan Birney
• [Bioperl-l] Re: LocationI   Hilmar Lapp
• [Bioperl-l] Hilmar and Ewan debate SeqFeatures some more...   Ewan Birney
  • [Bioperl-l] Hilmar and Ewan debate SeqFeatures some more...   Hilmar Lapp
    • [Bioperl-l] Hilmar and Ewan debate SeqFeatures some more...   Thomas Down
      • [Bioperl-l] Hilmar and Ewan debate SeqFeatures some more...   Hilmar Lapp
      • [Bioperl-l] Hilmar and Ewan debate SeqFeatures some more...   Ewan Birney
      • [Bioperl-l] Hilmar and Ewan debate SeqFeatures some more...   Mark Dalphin
    • [Bioperl-l] Hilmar and Ewan debate SeqFeatures some more...   Mark Wilkinson
    • [Bioperl-l] Hilmar and Ewan debate SeqFeatures some more...   Matthew Pocock
      • [Bioperl-l] Hilmar and Ewan debate SeqFeatures some more...   David Block
• [Bioperl-l] Re: [Fwd: Re: marker manipulation in bioperl]   Arek Kasprzyk
  • [Bioperl-l] Re: [Fwd: Re: marker manipulation in bioperl]   Heikki Lehvaslaiho
• [Bioperl-l] Bio::Index::Abstract & bug #860   Jason Stajich
  • [Bioperl-l] Bio::Index::Abstract & bug #860   Ewan Birney
• [Bioperl-l] conceeding to has-a location   Ewan Birney
  • [Bioperl-l] conceeding to has-a location   Jason Stajich
  • [Bioperl-l] Feature/Location   Hilmar Lapp
    • [Bioperl-l] Feature/Location   Jason Stajich
      • [Bioperl-l] Feature/Location   David Block
      • [Bioperl-l] Feature/Location   Ewan Birney
      • [Bioperl-l] Feature/Location   David Block
      • [Bioperl-l] Feature/Location   Jason Stajich
• [Bioperl-l] Location naming semantics   Jason Stajich
• [Bioperl-l] Re: [Bioperl-guts-l] RestrictionEnzyme.pm   Hilmar Lapp
• [Bioperl-l] Location committed   Jason Stajich
• [Bioperl-l] Test.pm does not ship with 5.004 patch level 4   Ewan Birney
  • [Bioperl-l] Test.pm does not ship with 5.004 patch level 4   Jason Stajich
    • [Bioperl-l] Test.pm does not ship with 5.004 patch level 4   Ewan Birney
      • [Bioperl-l] Test.pm does not ship with 5.004 patch level 4   Hilmar Lapp
      • [Bioperl-l] Test.pm does not ship with 5.004 patch level 4   Ewan Birney
      • [Bioperl-l] Test.pm does not ship with 5.004 patch level 4   Jason Stajich
      • [Bioperl-l] Test.pm does not ship with 5.004 patch level 4   Ewan Birney
      • [Bioperl-l] Test.pm does not ship with 5.004 patch level 4   Jason Stajich
      • [Bioperl-l] Test.pm does not ship with 5.004 patch level 4   Ewan Birney
      • [Bioperl-l] Test.pm does not ship with 5.004 patch level 4   Hilmar Lapp
      • [Bioperl-l] Test.pm does not ship with 5.004 patch level 4   Jason Stajich
• [Bioperl-l] BOSC 2001 [Bioinformatics Open Source Conference]   Ewan Birney
• [Bioperl-l] Re: Restriction Enzyme methods...   Adrian Goldman
• [Bioperl-l] SplitFeature parsing   Jason Stajich
  • [Bioperl-l] SplitFeature parsing   Ewan Birney
• [Bioperl-l] Bio::SeqIO::FTHelper   Jason Stajich
  • [Bioperl-l] Bio::SeqIO::FTHelper   Hilmar Lapp
• [Bioperl-l] Re: [Bioperl-guts-l] RestrictionEnzyme.pm (Hilmar Lapp)   Marc Colosimo
• [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Jason Stajich
  • [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Hilmar Lapp
    • [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Jason Stajich
      • [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Ewan Birney
      • [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Jason Stajich
      • [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Ewan Birney
• [Bioperl-l] failing test (singular!)   Jason Stajich
  • [Bioperl-l] failing test (singular!)   Hilmar Lapp
• [Bioperl-l] Bioperl on WinNT Update   Shailesh L Mistry
• [Bioperl-l] multiple blast script   Hilmar Lapp
• [Bioperl-l] RestrictionEnzyme.pm   Hilmar Lapp
• [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Hilmar Lapp
  • [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Mark Dalphin
• [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Hilmar Lapp
  • [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Mark Wilkinson
  • [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   David Block
    • [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Mark Wilkinson
  • [Bioperl-l] Bio::Location::Fuzzy, Bio::Location::Split   Mark Dalphin
• [Bioperl-l] test suite upgrade   Jason Stajich
  • [Bioperl-l] test suite upgrade   Hilmar Lapp
    • [Bioperl-l] test suite upgrade   David Block
  • [Bioperl-l] test suite upgrade   Ewan Birney
• [Bioperl-l] more fuzziness checked in   Jason Stajich
  • [Bioperl-l] more fuzziness checked in   Heikki Lehvaslaiho
• [Bioperl-l] Bio::PrimarySeq   Hilmar Lapp
  • [Bioperl-l] Bio::PrimarySeq   Ewan Birney
    • [Bioperl-l] Bio::PrimarySeq   Hilmar Lapp
• [Bioperl-l] Empty Seqs   Hilmar Lapp
• [Bioperl-l] all tests but LiveSeq.t pass   Ewan Birney
  • [Bioperl-l] all tests but LiveSeq.t pass   Kris Boulez
• [Bioperl-l] flexible warning/exception in SeqIO   Hilmar Lapp
  • [Bioperl-l] flexible warning/exception in SeqIO   Ewan Birney
    • [Bioperl-l] flexible warning/exception in SeqIO   Jason Stajich
• [Bioperl-l] Vector.pm commit   Paul-Christophe Varoutas
• [Bioperl-l] RetrictionEnzyme.pm: a proposal   Paul-Christophe Varoutas
  • [Bioperl-l] RetrictionEnzyme.pm: a proposal   Hilmar Lapp
  • [Bioperl-l] RetrictionEnzyme.pm: a proposal   Heikki Lehvaslaiho
• [Bioperl-l] Genscan exon frame computation   Hilmar Lapp
• [Bioperl-l] SeqFeature::Generic broken? no Location::Simple.pm   Mark Wilkinson
  • [Bioperl-l] SeqFeature::Generic broken? no Location::Simple.pm   Jason Stajich
  • [Bioperl-l] SeqFeature::Generic broken? no Location::Simple.pm   Ewan Birney
    • [Bioperl-l] SeqFeature::Generic broken? no Location::Simple.pm   Heikki Lehvaslaiho
• [Bioperl-l] LiveSeq back working   Joseph Insana
  • [Bioperl-l] LiveSeq back working   Jason Stajich
• [Bioperl-l] Bio Framework and XML   Iain Darroch
• [Bioperl-l] Bio::SeqFeature::Generic add_sub_SeqFeature   Jason Stajich
  • [Bioperl-l] Bio::SeqFeature::Generic add_sub_SeqFeature   Hilmar Lapp
    • [Bioperl-l] Bio::SeqFeature::Generic add_sub_SeqFeature   Jason Stajich
  • [Bioperl-l] Bio::SeqFeature::Generic add_sub_SeqFeature   Ewan Birney
• [Bioperl-l] missing use statements   Hilmar Lapp
• [Bioperl-l] Root::Object in bioxml.pm   Hilmar Lapp
  • [Bioperl-l] Root::Object in bioxml.pm   Ewan Birney
  • [Bioperl-l] Re: Root::Object in bioxml.pm   Jason Stajich
• [Bioperl-l] Re: [Bioperl-guts-l] Notification: incoming/888   Hilmar Lapp
• [Bioperl-l] Re: Bioperl-l digest, Vol 1 #200 - 15 msgs   Yuandan Zhang
  • [Bioperl-l] Re: Bioperl-l digest, Vol 1 #200 - 15 msgs   Ewan Birney
• [Bioperl-l] Status 0.7   Hilmar Lapp
• [Bioperl-l] SeqFeatureI review   Hilmar Lapp
  • [Bioperl-l] SeqFeatureI review   David Block
    • [Bioperl-l] SeqFeatureI review   Hilmar Lapp
      • [Bioperl-l] SeqFeatureI review   David Block
      • [Bioperl-l] SeqFeatureI review   Hilmar Lapp
• [Bioperl-l] Bio::Root::Object cleanup   Hilmar Lapp
  • [Bioperl-l] Bio::Root::Object cleanup   Jason Stajich
    • [Bioperl-l] Bio::Root::Object cleanup   Hilmar Lapp
  • [Bioperl-l] Re: Bio::Root::Object cleanup   Heikki Lehvaslaiho
• [Bioperl-l] LiveSeq tests warn   Hilmar Lapp
  • [Bioperl-l] Re: LiveSeq tests warn   Joseph Insana
  • [Bioperl-l] Re: LiveSeq tests warn   Paul-Christophe Varoutas
• [Bioperl-l] GO ontology browser module available   Mark Wilkinson
  • [Bioperl-l] GO ontology browser module available   Hilmar Lapp
    • [Bioperl-l] GO ontology browser module available   David Block
      • [Bioperl-l] GO ontology browser module available   Ewan Birney
      • [Bioperl-l] GO ontology browser module available   Mark Wilkinson
      • [Bioperl-l] GO ontology browser module available   Chris Mungall
• [Bioperl-l] RichSeqI   Ewan Birney
  • [Bioperl-l] RichSeqI   Hilmar Lapp
    • [Bioperl-l] RichSeqI   Hilmar Lapp
  • [Bioperl-l] RichSeqI   Jason Stajich
  • [Bioperl-l] RichSeqI   Hilmar Lapp
    • [Bioperl-l] RichSeqI   Ewan Birney
• [Bioperl-l] RichSeq   Ewan Birney
  • [Bioperl-l] RichSeq   Hilmar Lapp
• [Bioperl-l] introduction   Christopher Solomon
• [Bioperl-l] quit   Peter Tait
• [Bioperl-l] Bio::Factory   Hilmar Lapp
  • [Bioperl-l] Bio::Factory   Ewan Birney
  • [Bioperl-l] Bio::Factory   Jason Stajich
• [Bioperl-l] Incompatibility with Perl v5.6.0 [Fwd: XML::Parse test fails]   Heikki Lehvaslaiho
• [Bioperl-l] Bio::Factory::SeqAnalysisParserFactoryI   Hilmar Lapp
  • [Bioperl-l] Re: Bio::Factory::SeqAnalysisParserFactoryI   Ewan Birney
    • [Bioperl-l] Re: Bio::Factory::SeqAnalysisParserFactoryI   Jason Stajich
• [Bioperl-l] Cruft in module documentation ?   Kris Boulez
  • [Bioperl-l] Cruft in module documentation ?   Ewan Birney
    • [Bioperl-l] Cruft in module documentation ?   Kris Boulez
• [Bioperl-l] [Fwd: WinCVS and SSH]   Hilmar Lapp

Last message date: Wed Jan 31 23:08:20 2001
Archived on: Mon Mar 5 18:01:35 2001

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