[Bioperl-l] Re: Bio::SearchDist, Bio::Ext::Align

[Ewan Birney]

On Wed, 10 Jan 2001, Hilmar Lapp wrote:

> I thought for completeness I install the Bioperl XS modules in
> Bio::Ext::*, and downloaded bioperl-ext-0.6.tar.gz, which is
> advertised as the latest version.
> 
> Installation went fine, but now the t/SearchDist.t tests get
> executed. This revealed a couple of bugs in Bio::SearchDist, some
> of which are related to the RootI transition. Others consist of
> calling functions which are simply not present by that name in the
> extension module. I tried to fix them all, but now there is a
> complaint about a missing parameter in fit_EVD (expects two, but
> gets only 1 hardcoded parameter), which I don't know how to fix.

This is my bug to fix. I will look at it.

I don't think anyone has used SearchDist before, including me. Doh!


> 
> Does anyone use this module currently (and if so, why does it work
> for you?)? Did I grab the wrong version?
> 
> 	Hilmar
> -- 
> -----------------------------------------------------------------
> Hilmar Lapp                                email: hlapp@gmx.net
> GNF, San Diego, Ca. 92122                  phone: +1 858 812 1757
> -----------------------------------------------------------------
> 

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Ewan Birney. Mobile: +44 (0)7970 151230, Work: +44 1223 494420
<birney@ebi.ac.uk>. 
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