[Bioperl-l] Bio::Root::Object cleanup

[Hilmar Lapp]

Jason Stajich wrote:
> 
> > Bio/Tools/PPSEARCH/Parse.pm
> depends on old Bio::SeqFeatureSet which no longer exists, I'm not sure
> what to do here
> > Bio/Tools/PRFSCAN/Parse.pm
> ditto
> > Bio/Tools/PRINTS/Parse.pm
> ditto

These modules are obviously not being maintained, nor are they
functional, let alone test scripts. Does anyone know what the
intended destiny for these modules is? The author seems to be
Evgueni; is he still with EBI?

There was another module Tools::SeqWords which escaped my grep; I
fixed it to inherit from RootI and fixed also a couple of other
bugs there.

	Hilmar
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Hilmar Lapp                                email: hlapp@gmx.net
GNF, San Diego, Ca. 92122                  phone: +1 858 812 1757
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