2000-October Archives by Author

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Starting: Wed Dec 31 19:00:00 1969
Ending: Tue Oct 31 08:31:29 2000
Messages: 243

• [Bioperl-l] Re: primary_seq   Ewan Birney
• [Bioperl-l] Final 0.6.2 checks/merges   Ewan Birney
• [Bioperl-l] Namespace for the DrawableBioSeq?   Ewan Birney
• [Bioperl-l] Changes file   Ewan Birney
• [Bioperl-l] 3rd and last candidate out?   Ewan Birney
• [Bioperl-l] 0.6.2 and /examples   Ewan Birney
• [Bioperl-l] 0.6.2 and /examples   Ewan Birney
• [Bioperl-l] Cruft left over in bioperl-0.6.2pre3   Ewan Birney
• [Bioperl-l] clarification on Bio::DB::GenBank   Ewan Birney
• [Bioperl-l] Bioperl 0.6.2 Released   Ewan Birney
• [Bioperl-l] clarification on Bio::DB::GenBank   Ewan Birney
• [Bioperl-l] Use of Bio namespace   Ewan Birney
• [Bioperl-l] Use of Bio namespace   Ewan Birney
• [Bioperl-l] parsing only the summary part of a blast report   Ewan Birney
• [Bioperl-l] $seq->id() is read only   Ewan Birney
• [Bioperl-l] parsing only the summary part of a blast report   Ewan Birney
• [Bioperl-l] CVS tags for Ensembl   Ewan Birney
• [Bioperl-l] CVS tags for Ensembl   Ewan Birney
• [Bioperl-l] Namespace for the DrawableBioSeq?   David Block
• [Bioperl-l] bioperl-0.6.2pre3   David Block
• [Bioperl-l] Use of Bio namespace   David Block
• [Bioperl-l] Lost Alignment/Clustalw.pm   David Block
• [Bioperl-l] Lost Alignment/Clustalw.pm   David Block
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   David Block
• [Bioperl-l] Bio::PrimarySeq changes   David Block
• [Bioperl-l] bioperl-gui now in cvs repository!   David Block
• [Bioperl-l] Feedback from the course we ran   Kris Boulez
• [Bioperl-l] $seq->id() is read only   Kris Boulez
• [Bioperl-l] $seq->id() is read only   Kris Boulez
• [Bioperl-l] $seq->id() is read only   Kris Boulez
• [Bioperl-l] Bio::PrimarySeq changes   Kris Boulez
• [Bioperl-l] Bio::Tools::Blast parsing & report generation   Brian A. Desany, Ph.D.
• [Bioperl-l] getting the Sbjct database from a hit   Stephen A. Chervitz
• [Bioperl-l] Configuring BioPerl::DB for a fire wall   Kevin Clancy
• [Bioperl-l] Cruft left over in bioperl-0.6.2pre3   Peter van Heusden
• [Bioperl-l] Cruft left over in bioperl-0.6.2pre3   Peter van Heusden
• [Bioperl-l] Detecting type of an object.   Peter van Heusden
• [Bioperl-l] Detecting type of an object.   Peter van Heusden
• [Bioperl-l] SCF.pm   Peter van Heusden
• [Bioperl-l] Use of Bio namespace   Keith James
• [Bioperl-l] Use of Bio namespace   Keith James
• [Bioperl-l] Use of Bio namespace   Keith James
• [Bioperl-l] Use of Bio namespace   Keith James
• [Bioperl-l] parsing only the summary part of a blast report   Ian Korf
• [Bioperl-l] parsing only the summary part of a blast report   Ian Korf
• [Bioperl-l] ambiguous nucleotide translation table   Ian Korf
• [Bioperl-l] oh yeah, the attachment   Ian Korf
• [Bioperl-l] SCF.pm   Linus Taejoon Kwon
• [Bioperl-l] SCF.pm   Linus Taejoon Kwon
• [Bioperl-l] Re: primary_seq   Hilmar Lapp
• [Bioperl-l] Changes file   Hilmar Lapp
• [Bioperl-l] Re: primary_seq   Hilmar Lapp
• [Bioperl-l] bioperl-0.6.2pre3   Hilmar Lapp
• [Bioperl-l] changes to GenBank (and other) parsing in 0.6.2?   Hilmar Lapp
• [Bioperl-l] getting the Sbjct database from a hit   Hilmar Lapp
• [Bioperl-l] getting the Sbjct database from a hit   Hilmar Lapp
• [Bioperl-l] parsing only the summary part of a blast report   Hilmar Lapp
• [Bioperl-l] CVS tags for Ensembl   Hilmar Lapp
• [Bioperl-l] Lost Alignment/Clustalw.pm   Hilmar Lapp
• [Bioperl-l] Can't locate "_tag_value" error message in BPlite.t test   Hilmar Lapp
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   Hilmar Lapp
• [Bioperl-l] Can't locate "_tag_value" error message in BPlite.t test   Hilmar Lapp
• [Bioperl-l] Re: Can't locate clustalw   Hilmar Lapp
• [Bioperl-l] getting the Sbjct database from a hit   Catherine Letondal
• [Bioperl-l] getting the Sbjct database from a hit   Catherine Letondal
• [Bioperl-l] getting the Sbjct database from a hit   Catherine Letondal
• [Bioperl-l] getting the Sbjct database from a hit   Catherine Letondal
• [Bioperl-l] program that search databais   Aaron J Mackey
• [Bioperl-l] program that search databais   Aaron J Mackey
• [Bioperl-l] program that search databais   Aaron J Mackey
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   Aaron J Mackey
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   Aaron J Mackey
• [Bioperl-l] (no subject)   Raphael Noirfalise
• [Bioperl-l] clarification on Bio::DB::GenBank   Osborne, Brian
• [Bioperl-l] clarified : clarification on Bio::DB::GenBank   Osborne, Brian
• [Bioperl-l] Clustalw.pm wrapper model checked in   Peter Schattner
• [Bioperl-l] Clustalw.pm wrapper module checked in   Peter Schattner
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blast package   Peter Schattner
• [Bioperl-l] Can't locate "_tag_value" error message in BPlite.t test   Peter Schattner
• [Bioperl-l] Can't locate "_tag_value" error message in BPlite.t test   Peter Schattner
• [Bioperl-l] Re: Can't locate clustalw   Peter Schattner
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   Peter Schattner
• [Bioperl-l] 0.6.2 and /examples   Clay Shirky
• [Bioperl-l] parsing only the summary part of a blast report   Jason Stajich
• [Bioperl-l] SCF.pm   Jason Stajich
• [Bioperl-l] removing Seq features   Jason Stajich
• [Bioperl-l] Lost Alignment/Clustalw.pm   Jason Eric Stajich
• [Bioperl-l] Bio::PrimarySeq changes   Jason Eric Stajich
• [Bioperl-l] program that search databais   Tsvika
• [Bioperl-l] program that search databais   Peter J Ulintz
• [Bioperl-l] FreeBSD port of Bioperl   Johann Visagie
• [Bioperl-l] changes to GenBank (and other) parsing in 0.6.2?   Mark Wilkinson
• [Bioperl-l] changes to GenBank (and other) parsing in 0.6.2?   Mark Wilkinson
• [Bioperl-l] Bio::PrimarySeq changes   Mark Wilkinson
• [Bioperl-l] removing Seq features   Mark Wilkinson
• [Bioperl-l] removing Seq features   Mark Wilkinson
• [Bioperl-l] parsing only the summary part of a blast report   Zhao, David [PRI]
• [Bioperl-l] parsing only the summary part of a blast report   Zhao, David [PRI]
• [Bioperl-l] parsing only the summary part of a blast report   Zhao, David [PRI]
• [Bioperl-l] CVS tags for Ensembl   chris.dag
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   chris dagdigian
• [Bioperl-l] $seq->id() is read only   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] Detecting type of an object.   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] $seq->id() is read only   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] CVS tags for Ensembl   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] removing Seq features   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] getting the Sbjct database from a hit   hlapp@gmx.net
• [Bioperl-l] thanks, can I go now ?   becky tagett
• [Bioperl-l] Detecting type of an object.   gert thijs
• [Bioperl-l] parsing only the summary part of a blast report   gert thijs
• [Bioperl-l] Parsing blast report   gert thijs
• [Bioperl-l] Parsing blast report   gert thijs
• [Bioperl-l] Re: primary_seq   Ewan Birney
• [Bioperl-l] Final 0.6.2 checks/merges   Ewan Birney
• [Bioperl-l] Namespace for the DrawableBioSeq?   Ewan Birney
• [Bioperl-l] Changes file   Ewan Birney
• [Bioperl-l] 3rd and last candidate out?   Ewan Birney
• [Bioperl-l] 0.6.2 and /examples   Ewan Birney
• [Bioperl-l] 0.6.2 and /examples   Ewan Birney
• [Bioperl-l] Cruft left over in bioperl-0.6.2pre3   Ewan Birney
• [Bioperl-l] clarification on Bio::DB::GenBank   Ewan Birney
• [Bioperl-l] Bioperl 0.6.2 Released   Ewan Birney
• [Bioperl-l] clarification on Bio::DB::GenBank   Ewan Birney
• [Bioperl-l] Use of Bio namespace   Ewan Birney
• [Bioperl-l] Use of Bio namespace   Ewan Birney
• [Bioperl-l] parsing only the summary part of a blast report   Ewan Birney
• [Bioperl-l] $seq->id() is read only   Ewan Birney
• [Bioperl-l] parsing only the summary part of a blast report   Ewan Birney
• [Bioperl-l] CVS tags for Ensembl   Ewan Birney
• [Bioperl-l] CVS tags for Ensembl   Ewan Birney
• [Bioperl-l] removing Seq features   Ewan Birney
• [Bioperl-l] removing Seq features   Ewan Birney
• [Bioperl-l] Some more troubles with HTML module?   Ewan Birney
• [Bioperl-l] new experimental SRS module   Ewan Birney
• [Bioperl-l] bioperl-gui feedback   Ewan Birney
• [Bioperl-l] Namespace for the DrawableBioSeq?   David Block
• [Bioperl-l] bioperl-0.6.2pre3   David Block
• [Bioperl-l] Use of Bio namespace   David Block
• [Bioperl-l] Lost Alignment/Clustalw.pm   David Block
• [Bioperl-l] Lost Alignment/Clustalw.pm   David Block
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   David Block
• [Bioperl-l] Bio::PrimarySeq changes   David Block
• [Bioperl-l] bioperl-gui now in cvs repository!   David Block
• [Bioperl-l] Feedback from the course we ran   Kris Boulez
• [Bioperl-l] $seq->id() is read only   Kris Boulez
• [Bioperl-l] $seq->id() is read only   Kris Boulez
• [Bioperl-l] $seq->id() is read only   Kris Boulez
• [Bioperl-l] Bio::PrimarySeq changes   Kris Boulez
• [Bioperl-l] Bio::Tools::Blast parsing & report generation   Brian A. Desany, Ph.D.
• [Bioperl-l] getting the Sbjct database from a hit   Stephen A. Chervitz
• [Bioperl-l] Some more troubles with HTML module?   Steve Chervitz
• [Bioperl-l] Configuring BioPerl::DB for a fire wall   Kevin Clancy
• [Bioperl-l] How to get sequence of joins   Henrik.Seidel@schering.de
• [Bioperl-l] Scanning GenPept entries does not work   Henrik.Seidel@schering.de
• [Bioperl-l] Scanning GenPept entries does not work   Henrik.Seidel@schering.de
• Antwort: Re: [Bioperl-l] Scanning GenPept entries does not work   Henrik.Seidel@schering.de
• [Bioperl-l] Cruft left over in bioperl-0.6.2pre3   Peter van Heusden
• [Bioperl-l] Cruft left over in bioperl-0.6.2pre3   Peter van Heusden
• [Bioperl-l] Detecting type of an object.   Peter van Heusden
• [Bioperl-l] Detecting type of an object.   Peter van Heusden
• [Bioperl-l] SCF.pm   Peter van Heusden
• [Bioperl-l] Use of Bio namespace   Keith James
• [Bioperl-l] Use of Bio namespace   Keith James
• [Bioperl-l] Use of Bio namespace   Keith James
• [Bioperl-l] Use of Bio namespace   Keith James
• [Bioperl-l] How to get sequence of joins   Keith James
• [Bioperl-l] parsing only the summary part of a blast report   Ian Korf
• [Bioperl-l] parsing only the summary part of a blast report   Ian Korf
• [Bioperl-l] ambiguous nucleotide translation table   Ian Korf
• [Bioperl-l] oh yeah, the attachment   Ian Korf
• [Bioperl-l] SCF.pm   Linus Taejoon Kwon
• [Bioperl-l] SCF.pm   Linus Taejoon Kwon
• [Bioperl-l] SCF.pm   Linus Taejoon Kwon
• [Bioperl-l] new experimental SRS module   L.Pollak
• [Bioperl-l] Re: primary_seq   Hilmar Lapp
• [Bioperl-l] Changes file   Hilmar Lapp
• [Bioperl-l] Re: primary_seq   Hilmar Lapp
• [Bioperl-l] bioperl-0.6.2pre3   Hilmar Lapp
• [Bioperl-l] changes to GenBank (and other) parsing in 0.6.2?   Hilmar Lapp
• [Bioperl-l] getting the Sbjct database from a hit   Hilmar Lapp
• [Bioperl-l] getting the Sbjct database from a hit   Hilmar Lapp
• [Bioperl-l] parsing only the summary part of a blast report   Hilmar Lapp
• [Bioperl-l] CVS tags for Ensembl   Hilmar Lapp
• [Bioperl-l] Lost Alignment/Clustalw.pm   Hilmar Lapp
• [Bioperl-l] Can't locate "_tag_value" error message in BPlite.t test   Hilmar Lapp
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   Hilmar Lapp
• [Bioperl-l] Can't locate "_tag_value" error message in BPlite.t test   Hilmar Lapp
• [Bioperl-l] Re: Can't locate clustalw   Hilmar Lapp
• [Bioperl-l] getting the Sbjct database from a hit   Catherine Letondal
• [Bioperl-l] getting the Sbjct database from a hit   Catherine Letondal
• [Bioperl-l] getting the Sbjct database from a hit   Catherine Letondal
• [Bioperl-l] getting the Sbjct database from a hit   Catherine Letondal
• [Bioperl-l] program that search databais   Aaron J Mackey
• [Bioperl-l] program that search databais   Aaron J Mackey
• [Bioperl-l] program that search databais   Aaron J Mackey
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   Aaron J Mackey
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   Aaron J Mackey
• [Bioperl-l] (no subject)   Raphael Noirfalise
• [Bioperl-l] clarification on Bio::DB::GenBank   Osborne, Brian
• [Bioperl-l] clarified : clarification on Bio::DB::GenBank   Osborne, Brian
• [Bioperl-l] new experimental SRS module   Lorenz Pollak
• [Bioperl-l] Clustalw.pm wrapper model checked in   Peter Schattner
• [Bioperl-l] Clustalw.pm wrapper module checked in   Peter Schattner
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blast package   Peter Schattner
• [Bioperl-l] Can't locate "_tag_value" error message in BPlite.t test   Peter Schattner
• [Bioperl-l] Can't locate "_tag_value" error message in BPlite.t test   Peter Schattner
• [Bioperl-l] Re: Can't locate clustalw   Peter Schattner
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   Peter Schattner
• [Bioperl-l] 0.6.2 and /examples   Clay Shirky
• [Bioperl-l] parsing only the summary part of a blast report   Jason Stajich
• [Bioperl-l] SCF.pm   Jason Stajich
• [Bioperl-l] removing Seq features   Jason Stajich
• [Bioperl-l] Lost Alignment/Clustalw.pm   Jason Eric Stajich
• [Bioperl-l] Bio::PrimarySeq changes   Jason Eric Stajich
• [Bioperl-l] program that search databais   Tsvika
• [Bioperl-l] program that search databais   Peter J Ulintz
• [Bioperl-l] Some more troubles with HTML module?   Carl Virtanen
• [Bioperl-l] FreeBSD port of Bioperl   Johann Visagie
• [Bioperl-l] changes to GenBank (and other) parsing in 0.6.2?   Mark Wilkinson
• [Bioperl-l] changes to GenBank (and other) parsing in 0.6.2?   Mark Wilkinson
• [Bioperl-l] Bio::PrimarySeq changes   Mark Wilkinson
• [Bioperl-l] removing Seq features   Mark Wilkinson
• [Bioperl-l] removing Seq features   Mark Wilkinson
• [Bioperl-l] parsing only the summary part of a blast report   Zhao, David [PRI]
• [Bioperl-l] parsing only the summary part of a blast report   Zhao, David [PRI]
• [Bioperl-l] parsing only the summary part of a blast report   Zhao, David [PRI]
• [Bioperl-l] CVS tags for Ensembl   chris.dag
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   chris dagdigian
• [Bioperl-l] $seq->id() is read only   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] Detecting type of an object.   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] $seq->id() is read only   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] CVS tags for Ensembl   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] Proposed bioperl module for local running of the NCBI standalone blastpackage   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] removing Seq features   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] Scanning GenPept entries does not work   hilmar.lapp@pharma.Novartis.com
• [Bioperl-l] getting the Sbjct database from a hit   hlapp@gmx.net
• [Bioperl-l] Mailbase is censoring this and our IP: Please post to all your mail lists! God bless...   albert j. pinto
• [Bioperl-l] thanks, can I go now ?   becky tagett
• [Bioperl-l] Detecting type of an object.   gert thijs
• [Bioperl-l] parsing only the summary part of a blast report   gert thijs
• [Bioperl-l] Parsing blast report   gert thijs
• [Bioperl-l] Parsing blast report   gert thijs

Last message date: Tue Oct 31 08:31:29 2000
Archived on: Mon Mar 5 18:01:22 2001

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• More info on this list...