[Bioperl-l] bioperl-0.6.2pre3

[David Block]

Problem - I don't know if it's with my perl, or with the distro, or
what.  I'm running perl 5.6 on my LinuxPPC at home.  When I try to use
anything with Bioperl in it, I get the following, both from CPAN 0.6.0 and
from the latest 6.3pre3:

"std" is not defined in %Bio::Root::Object::EXPORT_TAGS at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/Root/Err.pm line 22
Can't continue after import errors at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/Root/Err.pm line 22
BEGIN failed--compilation aborted at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/Root/Err.pm line 22.
Compilation failed in require at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/Root/RootI.pm line 59.
BEGIN failed--compilation aborted at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/Root/RootI.pm line 59.
Compilation failed in require at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/Root/Object.pm line 24.
BEGIN failed--compilation aborted at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/Root/Object.pm line 24.
Compilation failed in require at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/Tools/CodonTable.pm line 160.
BEGIN failed--compilation aborted at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/Tools/CodonTable.pm line 160.
Compilation failed in require at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/PrimarySeqI.pm line 109.
BEGIN failed--compilation aborted at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/PrimarySeqI.pm line 109.
Compilation failed in require at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/SeqI.pm line 84.
BEGIN failed--compilation aborted at
/usr/local/lib/perl5/site_perl/5.6.0/Bio/SeqI.pm line 84.
Compilation failed in require at DrawableBioSequence.pm line 7.
BEGIN failed--compilation aborted at DrawableBioSequence.pm line 7.
Compilation failed in require at QueryScreen.pm line 19.
BEGIN failed--compilation aborted at QueryScreen.pm line 19.
Compilation failed in require at Workbench2.pl line 7.
BEGIN failed--compilation aborted at Workbench2.pl line 7.

std is the Bio::Root::Object standard export tag, and it's there, all
right.  The offending line is

Bio::Root::Object.pm line 34
%EXPORT_TAGS = ( std => [qw(&stack_trace &containment)] );

Looks good to me!

I'm puzzled...

Dave "@Home" Block