[Bioperl-l] $seq->id() is read only

Kris Boulez krbou@pgsgent.be
Thu, 12 Oct 2000 13:41:41 +0200


Quoting Ewan Birney (birney@ebi.ac.uk):
> On Thu, 12 Oct 2000 hilmar.lapp@pharma.novartis.com wrote:
> 
> 
> 
> I suspect that chaining ->id() such that it is a synonmy for ->display_id
> for the sets as well as the gets is "the right thing"
> 
I commited the following

Seq.pm
------
- changed documentation for display_id (get/set)
- made id() a real synonym for display_id (get and set)
- removed the declaration of unused variables in primary_id()

PrimarySeq.pm
-------------
- copied id() over from Seq.pm


I just noticed that the test for Clustalw crashes badly if the clustalw
is not found on a very specific location. Just ignoring this test might
be better.


Kris,