April 2007 Archives by date

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Starting: Mon Apr 2 02:54:58 UTC 2007
Ending: Tue May 1 00:22:35 UTC 2007
Messages: 247

• [Bioperl-l] installation bioperl   David Messina
• [Bioperl-l] bioperl and kegg(out of memory problem )   Ambrose
• [Bioperl-l] bioperl and kegg(out of memory problem )   Chris Fields
• [Bioperl-l] bioperl and kegg(out of memory problem )   Ambrose
• [Bioperl-l] Can't locate object method "seq_start" via package "Bio::DB::GenBank"   Eric Just
• [Bioperl-l] Can't locate object method "seq_start" via package "Bio::DB::GenBank"   Eric Just
• [Bioperl-l] bioperl and kegg(out of memory problem )   Chris Fields
• [Bioperl-l] installation bioperl   David Messina
• [Bioperl-l] Fwd: BLAST beta, URLAPI, and BioPerl (RemoteBlast users)   Chris Fields
• [Bioperl-l] Packaging bioperl for Fedora   Stéphane Téletchéa
• [Bioperl-l] Packaging bioperl for Fedora   Chris Fields
• [Bioperl-l] Packaging bioperl for Fedora   Allen Day
• [Bioperl-l] Packaging bioperl for Fedora   Chris Fields
• [Bioperl-l] installation bioperl   Sendu Bala
• [Bioperl-l] Packaging bioperl for Fedora   Sendu Bala
• [Bioperl-l] Re: read it immediately   Michael Pain
• [Bioperl-l] read it immediately   Thiago Venancio
• [Bioperl-l] blastall problem   DeeGee
• [Bioperl-l] How to patch something in installed bioperl module   Gowthaman Ramasamy
• [Bioperl-l] blastall problem   David Messina
• [Bioperl-l] blastall problem   DeeGee
• [Bioperl-l] How to patch something in installed bioperl module   Torsten Seemann
• [Bioperl-l] blastall problem   Torsten Seemann
• [Bioperl-l] blastall problem   DeeGee
• [Bioperl-l] Small bug in Bio::Tools::GFF.pm - Target output   Don Gilbert
• [Bioperl-l] Help parsing PSI-BLAST XML reports   Torsten Seemann
• [Bioperl-l] blastall problem   Torsten Seemann
• [Bioperl-l] Help parsing PSI-BLAST XML reports   Chris Fields
• [Bioperl-l] Mixed bless-ings with Bio::Seq/Bio::PrimarySeq (Bio::Seq::Meta::Array)   Chris Fields
• [Bioperl-l] Mixed bless-ings with Bio::Seq/Bio::PrimarySeq (Bio::Seq::Meta::Array)   Hilmar Lapp
• [Bioperl-l] Mixed bless-ings with Bio::Seq/Bio::PrimarySeq (Bio::Seq::Meta::Array)   Chris Fields
• [Bioperl-l] Mixed bless-ings with Bio::Seq/Bio::PrimarySeq (Bio::Seq::Meta::Array)   Michael Kiwala
• [Bioperl-l] blastall problem   DeeGee
• [Bioperl-l] blastall problem   Chris Fields
• [Bioperl-l] blastall problem   Torsten Seemann
• [Bioperl-l] blastall problem   DeeGee
• [Bioperl-l] Bio::Annotation::Collection strange behavior   Emmanuel Quevillon
• [Bioperl-l] Bio::Annotation::Collection strange behavior   David Messina
• [Bioperl-l] blastall problem   Jason Stajich
• [Bioperl-l] blastall problem   DeeGee
• [Bioperl-l] blastall problem   Bernd Web
• [Bioperl-l] blastall problem   Jason Stajich
• [Bioperl-l] Bio/DB/SeqFeature/Store/DBI/mysql.pm patched   Cook, Malcolm
• [Bioperl-l] blastall problem   DeeGee
• [Bioperl-l] Bio::DB::Fasta check for ragged line widths   Don Gilbert
• [Bioperl-l] Bio::DB::Fasta check for ragged line widths   Hilmar Lapp
• [Bioperl-l] Bio::DB::Fasta check for ragged line widths   Don Gilbert
• [Bioperl-l] Bio::DB::Fasta check for ragged line widths   Hilmar Lapp
• [Bioperl-l] Bio::DB::Fasta check for ragged line widths   Don Gilbert
• [Bioperl-l] Bio::DB::Fasta check for ragged line widths   Hilmar Lapp
• [Bioperl-l] parse blast report for the best evalue   DeeGee
• [Bioperl-l] Retrieve mRNA from Genome   Staffa, Nick (NIH/NIEHS)
• [Bioperl-l] Retrieve mRNA from Genome   Kevin Brown
• [Bioperl-l] parse blast report for the best evalue   Chris Fields
• [Bioperl-l] parse blast report for the best evalue   DeeGee
• [Bioperl-l] extract nonoverlapping subsequences from a whole genome   gopu_36
• [Bioperl-l] Bio::DB::Fasta check for ragged line widths   Brian Osborne
• [Bioperl-l] Bio::DB::SeqFeature::Store -cache option   Cook, Malcolm
• [Bioperl-l] [Bioperl-guts-l] moving tests to use Test::More   Chris Fields
• [Bioperl-l] Bio::DB::SeqFeature::Store -cache option   Chris Fields
• [Bioperl-l] [Bioperl-guts-l] moving tests to use Test::More   Spiros Denaxas
• [Bioperl-l] ] moving tests to use Test::More   Chris Fields
• [Bioperl-l] extract nonoverlapping subsequences from a whole genome   Sendu Bala
• [Bioperl-l] extract nonoverlapping subsequences from a whole genome   Chris Fields
• [Bioperl-l] extract nonoverlapping subsequences from a whole genome   Chris Fields
• [Bioperl-l] Bio::DB::Fasta check for ragged line widths   Lincoln Stein
• [Bioperl-l] Fwd: SimpleAlign bug?   Heikki Lehvaslaiho
• [Bioperl-l] Fwd: SimpleAlign bug?   Chris Fields
• [Bioperl-l] How to Remove root node from a tree, ???   kenzy ken
• [Bioperl-l] Fwd: SimpleAlign bug?   Chris Fields
• [Bioperl-l] How to Remove root node from a tree, ???   Sendu Bala
• [Bioperl-l] rpsblast results unsupported by Bio::SearchIO::Writer   Emeric Sevin
• [Bioperl-l] [Bioperl-guts-l] moving tests to use Test::More   Nathan Haigh
• [Bioperl-l] rpsblast results unsupported by Bio::SearchIO::Writer   Chris Fields
• [Bioperl-l] [Bioperl-guts-l] moving tests to use Test::More   Spiros Denaxas
• [Bioperl-l] Fwd: SimpleAlign bug?   Kevin Brown
• [Bioperl-l] Fwd: SimpleAlign bug?   Spiros Denaxas
• [Bioperl-l] Fwd: SimpleAlign bug?   Michael Kiwala
• [Bioperl-l] Fwd: SimpleAlign bug?   Andreas Kahari
• [Bioperl-l] Affys ReseqChip   Marian Thieme
• [Bioperl-l] Fwd: SimpleAlign bug?   Sendu Bala
• [Bioperl-l] [Bioperl-guts-l] moving tests to use Test::More   Heikki Lehvaslaiho
• [Bioperl-l] [Bioperl-guts-l] moving tests to use Test::More   Chris Fields
• [Bioperl-l] Fwd: SimpleAlign bug?   Chris Fields
• [Bioperl-l] Thoughts on Bio::Tools::Glimmer   Andrew Stewart
• [Bioperl-l] Odd spamming on bioperl wiki   Chris Fields
• [Bioperl-l] Thoughts on Bio::Tools::Glimmer   Torsten Seemann
• [Bioperl-l] [Bioperl-guts-l] moving tests to use Test::More   Spiros Denaxas
• [Bioperl-l] Fwd: SimpleAlign bug?   Kevin Brown
• [Bioperl-l] Fwd: SimpleAlign bug?   Sendu Bala
• [Bioperl-l] Thoughts on Bio::Tools::Glimmer   Mark Johnson
• [Bioperl-l] Thoughts on Bio::Tools::Glimmer   Chris Fields
• [Bioperl-l] Thoughts on Bio::Tools::Glimmer   Andrew Stewart
• [Bioperl-l] Thoughts on Bio::Tools::Glimmer   Mark Johnson
• [Bioperl-l] [Bioperl-guts-l] moving tests to use Test::More   Spiros Denaxas
• [Bioperl-l] Odd spamming on bioperl wiki   Mark Johnson
• [Bioperl-l] Odd spamming on bioperl wiki   Chris Fields
• [Bioperl-l] [Bioperl-guts-l] moving tests to use Test::More   Chris Fields
• [Bioperl-l] Odd spamming on bioperl wiki   Spiros Denaxas
• [Bioperl-l] Affys ReseqChip   Jonathan Epstein
• [Bioperl-l] Odd spamming on bioperl wiki   Mauricio Herrera Cuadra
• [Bioperl-l] Odd spamming on bioperl wiki   Spiros Denaxas
• [Bioperl-l] Odd spamming on bioperl wiki   Mauricio Herrera Cuadra
• [Bioperl-l] Odd spamming on bioperl wiki   Chris Fields
• [Bioperl-l] Odd spamming on bioperl wiki   Spiros Denaxas
• [Bioperl-l] GenericHit->start/end needs tiled hsps?   Sendu Bala
• [Bioperl-l] Affys ReseqChip   Marian Thieme
• [Bioperl-l] How to parse blast result to get 2nd best hit score   gopu_36
• [Bioperl-l] extracting coding sequence from BLAST   Thiago Venancio
• [Bioperl-l] extracting coding sequence from BLAST   Jason Stajich
• [Bioperl-l] rpsblast results unsupported by Bio::SearchIO::Writer   Jason Stajich
• [Bioperl-l] extracting coding sequence from BLAST   Thiago Venancio
• [Bioperl-l] extracting coding sequence from BLAST   Jason Stajich
• [Bioperl-l] How to parse blast result to get 2nd best hit score   Jason Stajich
• [Bioperl-l] error while remote blast against swissprot db   DeeGee
• [Bioperl-l] error while remote blast against swissprot db   David Messina
• [Bioperl-l] error while remote blast against swissprot db   Spiros Denaxas
• [Bioperl-l] error with blast parsing by searchIO   sergei ryazansky
• [Bioperl-l] error with blast parsing by searchIO   Chris Fields
• [Bioperl-l] error with blast parsing by searchIO   Jason Stajich
• [Bioperl-l] error while remote blast against swissprot db   DeeGee
• [Bioperl-l] error while remote blast against swissprot db   David Messina
• [Bioperl-l] error while remote blast against swissprot db   Chris Fields
• [Bioperl-l] error with blast parsing by searchIO   sergei ryazansky
• [Bioperl-l] error with blast parsing by searchIO   Sendu Bala
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Wijaya Edward
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Spiros Denaxas
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Wijaya Edward
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   David Messina
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Spiros Denaxas
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Wijaya Edward
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   David Messina
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Kevin Brown
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Sean Davis
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Chris Fields
• [Bioperl-l] Bio::Matrix::PSM::ProtPsm   Chris Fields
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Chris Mungall
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Chris Mungall
• [Bioperl-l] error while remote blast against swissprot db   DeeGee
• [Bioperl-l] error while remote blast against swissprot db   DeeGee
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Chris Fields
• [Bioperl-l] error while remote blast against swissprot db   DeeGee
• [Bioperl-l] error while remote blast against swissprot db   Chris Fields
• [Bioperl-l] error while remote blast against swissprot db   DeeGee
• [Bioperl-l] HOWTO:Writing BioPerl Tests   Chris Fields
• [Bioperl-l] error while remote blast against swissprot db   Chris Fields
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Chris Mungall
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Wijaya Edward
• [Bioperl-l] [BioSQL-l] Problem loading GO.   Hilmar Lapp
• [Bioperl-l] CVS AND PAML   Luba Pardo
• [Bioperl-l] CVS AND PAML   Albert Vilella
• [Bioperl-l] Parsing FASTA m10 output   Ioannis Kirmitzoglou
• [Bioperl-l] How to Create Sequence and TFBS Graph with Perl   Edward WIJAYA
• [Bioperl-l] [BioSQL-l] Problem loading GO.   Leighton Pritchard
• [Bioperl-l] Packaging bioperl for Fedora   Alex Lancaster
• [Bioperl-l] CVS AND PAML   Luba Pardo
• [Bioperl-l] Packaging bioperl for Fedora   Chris Fields
• [Bioperl-l] [Fwd: Re: How to Create Sequence and TFBS Graph with Perl]   Stefan Kirov
• [Bioperl-l] [BioSQL-l] Problem loading GO.   Hilmar Lapp
• [Bioperl-l] Packaging bioperl for Fedora   Alex Lancaster
• [Bioperl-l] [BioSQL-l] Problem loading GO.   Leighton Pritchard
• [Bioperl-l] [BioSQL-l] Problem loading GO.   Chris Fields
• [Bioperl-l] Packaging bioperl for Fedora   Chris Fields
• [Bioperl-l] Parsing FASTA m10 output   Ioannis Kirmitzoglou
• [Bioperl-l] Parsing FASTA m10 output   Chris Fields
• [Bioperl-l] [BioSQL-l] Problem loading GO.   Leighton Pritchard
• [Bioperl-l] Packaging bioperl for Fedora   Lincoln Stein
• [Bioperl-l] bioperl-run and Bio::Root::AccessorMaker   Alex Lancaster
• [Bioperl-l] [Fwd: Re: How to Create Sequence and TFBS Graph with Perl]   Shameer Khadar
• [Bioperl-l] [Fwd: Re: How to Create Sequence and TFBS Graph with Perl]   Sean Davis
• [Bioperl-l] Immediate-effect deprecations (was: bioperl-run and Bio::Root::AccessorMaker)   Sendu Bala
• [Bioperl-l] Immediate-effect deprecations (was: bioperl-run and Bio::Root::AccessorMaker)   Chris Fields
• [Bioperl-l] Immediate-effect deprecations   Sendu Bala
• [Bioperl-l] Immediate-effect deprecations   Chris Fields
• [Bioperl-l] Immediate-effect deprecations   Hilmar Lapp
• [Bioperl-l] Immediate-effect deprecations (was: bioperl-run and Bio::Root::AccessorMaker)   Hilmar Lapp
• [Bioperl-l] Immediate-effect deprecations   Chris Fields
• [Bioperl-l] DB.t (Bio::DB::Query::GenBank) failures   Sendu Bala
• [Bioperl-l] DB.t (Bio::DB::Query::GenBank) failures   Chris Fields
• [Bioperl-l] Skipping/Failing tests   Chris Fields
• [Bioperl-l] DB.t (Bio::DB::Query::GenBank) failures   Baik, Ki
• [Bioperl-l] Packaging bioperl for Fedora   Brian O'Connor
• [Bioperl-l] Skipping/Failing tests   Mauricio Herrera Cuadra
• [Bioperl-l] DB.t (Bio::DB::Query::GenBank) failures   Chris Fields
• [Bioperl-l] Immediate-effect deprecations   Alex Lancaster
• [Bioperl-l] GenericHit->start/end needs tiled hsps?   Steve Chervitz
• [Bioperl-l] To be deprecated: Bio::Tools::Run::AbstractRunner, Bio::Tools::Run::Phylo::Forester::SDI and Bio::Tools::Run::JavaRunner   Sendu Bala
• [Bioperl-l] Immediate-effect deprecations   Sendu Bala
• [Bioperl-l] tree copy by-value   Stephen Montgomery
• [Bioperl-l] Small bug in Bio::Tools::GFF.pm - Target output   Sendu Bala
• [Bioperl-l] tree copy by-value   Sendu Bala
• [Bioperl-l] tree copy by-value   Stephen Montgomery
• [Bioperl-l] tree copy by-value   Jason Stajich
• [Bioperl-l] tree copy by-value   Sendu Bala
• [Bioperl-l] Bio::Graphics - Howto Show Negative Start-End and Enable Connector   Edward Wijaya
• [Bioperl-l] tree copy by-value   Stephen Montgomery
• [Bioperl-l] Bio::Graphics - Howto Show Negative Start-End and Enable Connector   Wijaya Edward
• [Bioperl-l] Parsing FASTA m10 output   Ioannis Kirmitzoglou
• [Bioperl-l] Small bug in Bio::Tools::GFF.pm - Target output   Don Gilbert
• [Bioperl-l] How to Create Sequence and TFBS Graph with Perl   Stefan Kirov
• [Bioperl-l] Protparam using BioPerl   Shameer Khadar
• [Bioperl-l] Bio::Graphics - Howto Show Negative Start-End and Enable Connector   Siddhartha Basu
• [Bioperl-l] Small bug in Bio::Tools::GFF.pm - Target output   Brian Osborne
• [Bioperl-l] Getting Gene Sequences with Bioperl   Wijaya Edward
• [Bioperl-l] Parsing FASTA m10 output   Hilmar Lapp
• [Bioperl-l] ncbi blast -V T option   Alexander Kozik
• [Bioperl-l] Parsing FASTA m10 output   Jason Stajich
• [Bioperl-l] error while remote blast against swissprot db   DeeGee
• [Bioperl-l] Parsing FASTA m10 output   Chris Fields
• [Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl   Wijaya Edward
• [Bioperl-l] Parsing FASTA m10 output   Ioannis Kirmitzoglou
• [Bioperl-l] Parsing FASTA m10 output   Jason Stajich
• [Bioperl-l] Parsing FASTA m10 output   Ioannis Kirmitzoglou
• [Bioperl-l] Parsing FASTA m10 output   Chris Fields
• [Bioperl-l] Parsing FASTA m10 output   aaron.j.mackey at gsk.com
• [Bioperl-l] Parsing FASTA m10 output   Chris Fields
• [Bioperl-l] WrapperBase / StandAloneBlast executable() method confusion   Sendu Bala
• [Bioperl-l] WrapperBase / StandAloneBlast executable() method confusion   Chris Fields
• [Bioperl-l] lack of markers for some genotypes in some Bio::PopGen::Statistics methods   Albert Vilella
• [Bioperl-l] rpsblast results unsupported by Bio::SearchIO::Writer   Emeric Sevin
• [Bioperl-l] problem parsing FASTA output - bug or my fault?   Aidan Budd
• [Bioperl-l] Handling discontiguous feature locations in Bio::DB::SeqFeature::Store -- proposed patch to Bio::Graphics::FeatureBase   Cook, Malcolm
• [Bioperl-l] problem parsing FASTA output - bug or my fault?   Jason Stajich
• [Bioperl-l] problem parsing FASTA output - bug or my fault?   David Messina
• [Bioperl-l] check for the continous segments to extract the sequences   gopu_36
• [Bioperl-l] check for the continous segments to extract the sequences   Jason Stajich
• [Bioperl-l] check for the continous segments to extract thesequences   Cook, Malcolm
• [Bioperl-l] Handling discontiguous feature locations in Bio::DB::SeqFeature::Store -- proposed patch to Bio::Graphics::FeatureBase   Lincoln Stein
• [Bioperl-l] Handling discontiguous feature locations in Bio::DB::SeqFeature::Store -- proposed patch to Bio::Graphics::FeatureBase   Cook, Malcolm
• [Bioperl-l] bioperl::db   Bernd Mueller
• [Bioperl-l] What file format does Bio::CodonUsage::IO expect?   Ben McIlwain
• [Bioperl-l] What file format does Bio::CodonUsage::IO expect?   Chris Fields
• [Bioperl-l] What file format does Bio::CodonUsage::IO expect?   Ben McIlwain
• [Bioperl-l] What file format does Bio::CodonUsage::IO expect?   Chris Fields
• [Bioperl-l] What file format does Bio::CodonUsage::IO expect?   Ben McIlwain
• [Bioperl-l] bioperl::db   Bernd Mueller
• [Bioperl-l] Bio::DB::Biblio::PDF - incomplete?   Chris Fields
• [Bioperl-l] Bio::DB::Biblio::PDF - incomplete?   Allen Day
• [Bioperl-l] Bio::DB::Biblio::PDF - incomplete?   Chris Fields
• [Bioperl-l] PMC and EUtilities, was bioperl::db   Chris Fields
• [Bioperl-l] Bio::DB::Biblio::PDF - incomplete?   Allen Day
• [Bioperl-l] Pb makefile   Francoise.LECOMTE at biogemma.com
• [Bioperl-l] PMC and EUtilities, was bioperl::db   Chris Fields
• [Bioperl-l] Bio::DB::Biblio::PDF - incomplete?   Allen Day
• [Bioperl-l] Bio::DB::Biblio::PDF - incomplete?   Chris Fields
• [Bioperl-l] generate a fasta file from the blast report   DeeGee
• [Bioperl-l] generate a fasta file from the blast report   Torsten Seemann

Last message date: Tue May 1 00:22:35 UTC 2007
Archived on: Mon Jun 16 02:48:08 UTC 2014

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