[Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl

[David Messina]

I use BioMART for this kind of thing. If you need to do this for more  
than a couple of GO terms, BioMART has a Perl API you can use to  
connect to their data.

http://www.biomart.org/

http://www.biomart.org/install-overview.html

Dave