[Bioperl-l] Extracting Gene Names Genome Ontology (GO) with Perl

[Spiros Denaxas]

Hi Edward,

What organism are you interested in? I have some code from my PhD
based on the Saccharomyces cerevisiae genome. Basically uses the SGD
flat files and a local MySQL instance of GO. Might be worth turning
into modules if people are interested in it, although it is pretty
organism oriented and the lack of abstraction might introduce a number
of problems.

Spiros

On 4/16/07, Wijaya Edward <ewijaya at i2r.a-star.edu.sg> wrote:
>
> Dear all,
>
> Given a GO id, is there a way to extract all
> the related gene names from that id with Perl?
>
> Anybody has experience with that?
> I've looked through GO module in CPAN, but can't seem
> to find any tool that facilitated that searc
>
> Look forward very much for your advice.
>
> --
> Edward WIJAYA
> SINGAPORE
>
> ------------ Institute For Infocomm Research - Disclaimer -------------
> This email is confidential and may be privileged.  If you are not the intended recipient, please delete it and notify us immediately. Please do not copy or use it for any purpose, or disclose its contents to any other person. Thank you.
> --------------------------------------------------------
> _______________________________________________
> Bioperl-l mailing list
> Bioperl-l at lists.open-bio.org
> http://lists.open-bio.org/mailman/listinfo/bioperl-l
>