November 2005 Archives by author

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Starting: Tue Nov 1 00:13:59 EST 2005
Ending: Tue Nov 29 21:01:06 EST 2005
Messages: 174

• [BioRuby-cvs] bioruby/lib/bio/appl clustalw.rb, 1.8, 1.9 sim4.rb, 1.3, 1.4 mafft.rb, 1.7, 1.8   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/clustalw report.rb,1.7,1.8   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/sim4 report.rb,1.5,1.6   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/blast format0.rb, 1.15, 1.16 wublast.rb, 1.3, 1.4   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/bl2seq report.rb,1.4,1.5   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/spidey report.rb,1.6,1.7   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/db nbrf.rb,1.5,1.6   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/io flatfile.rb,1.39,1.40   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/mafft report.rb,1.6,1.7   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/blat report.rb,1.4,1.5   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/io flatfile.rb,1.40,1.41   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio alignment.rb,1.9,1.10   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio alignment.rb,1.10,1.11   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio alignment.rb,1.11,1.12   Naohisa Goto
• [BioRuby-cvs] bioruby/test/unit/bio test_alignment.rb,1.3,1.4   Naohisa Goto
• [BioRuby-cvs] bioruby/test/unit/bio/appl/tmhmm test_report.rb, NONE, 1.1   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/appl/psort report.rb,1.10,1.11   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/appl/genscan report.rb,1.5,1.6   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/appl psort.rb,1.7,1.8   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/db/embl common.rb, 1.7, 1.8 embl.rb, 1.24, 1.25 sptr.rb, 1.28, 1.29   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/appl/psort report.rb,1.11,1.12   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/appl/tmhmm report.rb,1.4,1.5   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/appl/genscan report.rb,1.6,1.7   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/db aaindex.rb,1.13,1.14   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/db gff.rb,1.3,1.4   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/db litdb.rb,0.5,0.6   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/db aaindex.rb,1.14,1.15   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db/kegg - New directory   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db/kegg test_genes.rb,NONE,1.1   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db/kegg test_genes.rb,1.1,1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db/kegg test_genes.rb,1.2,1.3   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/util test_sirna.rb,NONE,1.1   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/util sirna.rb,1.4,1.5   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby README.DEV,1.6,1.7   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/util sirna.rb,1.5,1.6   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby README.DEV,1.7,1.8   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio sequence.rb,0.46,0.47   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio test_extend.rb,1.1,NONE   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/blast test_report.rb, 1.1, 1.2 test_xmlparser.rb, 1.1, 1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/genscan test_report.rb, 1.1, 1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/sosui test_report.rb, 1.2, 1.3   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/targetp test_report.rb, 1.2, 1.3   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl test_blast.rb,1.1,1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/tmhmm test_report.rb, 1.1, 1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/data test_aa.rb, 1.2, 1.3 test_codontable.rb, 1.2, 1.3 test_na.rb, 1.2, 1.3   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/data test_aa.rb, 1.3, 1.4 test_codontable.rb, 1.3, 1.4 test_na.rb, 1.3, 1.4   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db/embl test_common.rb,1.1,1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db/embl test_embl.rb,1.2,1.3   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db/embl test_sptr.rb,1.1,1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db/embl test_uniprot.rb, 1.1, 1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db test_fasta.rb,1.1,1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db test_gff.rb,1.1,1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db test_prosite.rb,1.1,1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/shell/plugin test_seq.rb, 1.1, 1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio test_db.rb,1.1,1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio test_feature.rb,1.1,1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio test_shell.rb,1.1,1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/util test_contingency_table.rb, 1.1, 1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio test_sequence.rb,1.4,1.5   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/io ddbjxml.rb,1.8,1.9   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby ChangeLog,1.41,1.42   Katayama Toshiaki
• [BioRuby-cvs] bioruby README.DEV,1.2,1.3   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc Changes-0.7.rd,1.2,1.3   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib bio.rb,1.56,1.57   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio command.rb,1.2,1.3   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio feature.rb,1.7,1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio pathway.rb,1.32,1.33   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio shell.rb,1.3,1.4   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/data aa.rb,0.12,0.13 na.rb,0.14,0.15   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio sequence.rb,0.44,0.45   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio shell.rb,1.4,1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin codon.rb,NONE,1.1   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/data codontable.rb,0.13,0.14   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/db/kegg expression.rb,1.8,1.9   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/db/kegg kgml.rb,1.1,1.2   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/io das.rb,1.9,1.10   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/io dbget.rb,1.10,1.11   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/io ddbjxml.rb,1.6,1.7   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb,1.3,1.4   Katayama Toshiaki
• [BioRuby-cvs] bioruby/bin bioruby,1.3,1.4   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell session.rb,1.1,1.2   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin flatfile.rb,1.3,1.4   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin midi.rb,1.2,1.3   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin obda.rb,1.1,1.2   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin seq.rb,1.4,1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby ChangeLog,1.42,1.43   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc Changes-0.7.rd,1.3,1.4   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin keggapi.rb,NONE,1.1   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin codon.rb,1.1,1.2   Katayama Toshiaki
• [BioRuby-cvs] bioruby/bin bioruby,1.4,1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio shell.rb,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb,1.4,1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell session.rb,1.2,1.3   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin keggapi.rb,1.1,1.2   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin seq.rb,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell session.rb,1.3,1.4   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby README.DEV,1.3,1.4   Katayama Toshiaki
• [BioRuby-cvs] bioruby README.DEV,1.4,1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc Changes-0.7.rd,1.4,1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/db/kegg genes.rb,0.20,0.21   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/db/kegg genes.rb,0.21,0.22   Katayama Toshiaki
• [BioRuby-cvs] bioruby README.DEV,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/data na.rb,0.15,0.16   Katayama Toshiaki
• [BioRuby-cvs] bioruby/bin bioruby,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/data aa.rb, 0.13, 0.14 codontable.rb, 0.14, 0.15   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/io das.rb, 1.10, 1.11 ddbjxml.rb, 1.7, 1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio shell.rb,1.6,1.7   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb, 1.6, 1.7 session.rb, 1.4, 1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin codon.rb, 1.2, 1.3 flatfile.rb, 1.4, 1.5 keggapi.rb, 1.2, 1.3 obda.rb, 1.2, 1.3 seq.rb, 1.6, 1.7   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/db/genbank common.rb, 1.7, 1.8 genbank.rb, 0.36, 0.37   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc Changes-0.7.rd,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc Changes-0.7.rd,1.6,1.7   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/data aa.rb, 0.14, 0.15 codontable.rb, 0.15, 0.16 na.rb, 0.16, 0.17   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio extend.rb,1.2,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc Changes-0.7.rd,1.7,1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin seq.rb,1.7,1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/data aa.rb,0.15,0.16   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio sequence.rb,0.45,0.46   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/util contingency_table.rb,NONE,1.1   Katayama Toshiaki
• [BioRuby-cvs] bioruby/test/unit/bio/util test_contingency_table.rb, NONE, 1.1   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin flatfile.rb,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin seq.rb,1.8,1.9   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio sequence.rb,0.47,0.48   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb,1.7,1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb,1.8,1.9   Katayama Toshiaki
• [BioRuby-cvs] bioruby/bin bioruby,1.6,1.7   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio shell.rb,1.7,1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb, 1.9, 1.10 session.rb, 1.5, 1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin codon.rb,1.3,1.4   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin seq.rb,1.9,1.10   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin obda.rb,1.3,1.4   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/io keggapi.rb,1.9,1.10   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/data na.rb,0.17,0.18   Katayama Toshiaki
• [BioRuby-cvs] bioruby/test/unit/bio/data test_na.rb,1.4,1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin codon.rb,1.4,1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin seq.rb,1.10,1.11   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin keggapi.rb,1.3,1.4   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb,1.10,1.11   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin flatfile.rb, 1.6, 1.7 midi.rb, 1.3, 1.4 seq.rb, 1.11, 1.12   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell session.rb,1.6,1.7   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin codon.rb,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio sequence.rb,0.48,0.49   Katayama Toshiaki
• [BioRuby-cvs] bioruby/bin bioruby,1.7,1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb, 1.11, 1.12 session.rb, 1.7, 1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/io registry.rb,1.14,1.15   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/io fetch.rb,1.2,1.3   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio shell.rb,1.8,1.9   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell access.rb,NONE,1.1   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin seq.rb,1.12,1.13   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb,1.12,1.13   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin flatfile.rb,1.7,1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin obda.rb,1.4,1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc Changes-0.7.rd,1.8,1.9   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib bio.rb,1.57,1.58   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/db transfac.rb,1.9,1.10   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/io/flatfile index.rb,1.14,1.15   Katayama Toshiaki
• [BioRuby-cvs] bioruby/bin bioruby,1.8,1.9   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb,1.13,1.14   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio shell.rb,1.9,1.10   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell access.rb,1.1,1.2   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell session.rb,1.8,1.9   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin codon.rb,1.6,1.7   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin seq.rb,1.13,1.14   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin flatfile.rb,1.8,1.9   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin obda.rb,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin midi.rb,1.4,1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin keggapi.rb,1.4,1.5   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin midi.rb,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell access.rb, 1.2, 1.3 session.rb, 1.9, 1.10   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin codon.rb, 1.7, 1.8 flatfile.rb, 1.9, 1.10 keggapi.rb, 1.5, 1.6 obda.rb, 1.6, 1.7 seq.rb, 1.14, 1.15   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio feature.rb,1.8,1.9   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin flatfile.rb,1.10,1.11   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin keggapi.rb, 1.6, 1.7 obda.rb, 1.7, 1.8   Katayama Toshiaki

Last message date: Tue Nov 29 21:01:06 EST 2005
Archived on: Tue Nov 29 20:55:56 EST 2005

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