[BioRuby-cvs] bioruby/test/unit/bio/db test_fasta.rb,1.1,1.2

[Mitsuteru C. Nakao]

Update of /home/repository/bioruby/bioruby/test/unit/bio/db
In directory pub.open-bio.org:/tmp/cvs-serv16461/test/unit/bio/db

Modified Files:
	test_fasta.rb 
Log Message:
* Fixed the order of arguments of assert_equal.


Index: test_fasta.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/test/unit/bio/db/test_fasta.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** test_fasta.rb	27 Oct 2005 14:21:23 -0000	1.1
--- test_fasta.rb	23 Nov 2005 11:21:15 -0000	1.2
***************
*** 32,37 ****
  
      def test_delimiter
!       assert_equal(Bio::FastaFormat::DELIMITER, "\n>")
!       assert_equal(Bio::FastaFormat::RS, "\n>")
      end
  
--- 32,37 ----
  
      def test_delimiter
!       assert_equal("\n>", Bio::FastaFormat::DELIMITER)
!       assert_equal("\n>", Bio::FastaFormat::RS)
      end
  
***************
*** 68,137 ****
      def test_entry
        data = ">sce:YBR160W  CDC28, SRM5; cyclin-dependent protein kinase catalytic subunit [EC:2.7.1.-] [SP:CC28_YEAST]\nMSGELANYKRLEKVGEGTYGVVYKALDLRPGQGQRVVALKKIRLESEDEG\nVPSTAIREISLLKELKDDNIVRLYDIVHSDAHKLYLVFEFLDLDLKRYME\nGIPKDQPLGADIVKKFMMQLCKGIAYCHSHRILHRDLKPQNLLINKDGNL\nKLGDFGLARAFGVPLRAYTHEIVTLWYRAPEVLLGGKQYSTGVDTWSIGC\nIFAEMCNRKPIFSGDSEIDQIFKIFRVLGTPNEAIWPDIVYLPDFKPSFP\nQWRRKDLSQVVPSLDPRGIDLLDKLLAYDPINRISARRAAIHPYFQES\n"
!       assert_equal(@obj.entry, data)
      end
  
      def test_entry_id
!       assert_equal(@obj.entry_id, 'sce:YBR160W')
      end
  
      def test_definition
        data = "sce:YBR160W  CDC28, SRM5; cyclin-dependent protein kinase catalytic subunit [EC:2.7.1.-] [SP:CC28_YEAST]"
!       assert_equal(@obj.definition, data)
      end
  
      def test_data
        data = "\nMSGELANYKRLEKVGEGTYGVVYKALDLRPGQGQRVVALKKIRLESEDEG\nVPSTAIREISLLKELKDDNIVRLYDIVHSDAHKLYLVFEFLDLDLKRYME\nGIPKDQPLGADIVKKFMMQLCKGIAYCHSHRILHRDLKPQNLLINKDGNL\nKLGDFGLARAFGVPLRAYTHEIVTLWYRAPEVLLGGKQYSTGVDTWSIGC\nIFAEMCNRKPIFSGDSEIDQIFKIFRVLGTPNEAIWPDIVYLPDFKPSFP\nQWRRKDLSQVVPSLDPRGIDLLDKLLAYDPINRISARRAAIHPYFQES\n"
!       assert_equal(@obj.data, data)
      end
  
      def test_seq
        seq = 'MSGELANYKRLEKVGEGTYGVVYKALDLRPGQGQRVVALKKIRLESEDEGVPSTAIREISLLKELKDDNIVRLYDIVHSDAHKLYLVFEFLDLDLKRYMEGIPKDQPLGADIVKKFMMQLCKGIAYCHSHRILHRDLKPQNLLINKDGNLKLGDFGLARAFGVPLRAYTHEIVTLWYRAPEVLLGGKQYSTGVDTWSIGCIFAEMCNRKPIFSGDSEIDQIFKIFRVLGTPNEAIWPDIVYLPDFKPSFPQWRRKDLSQVVPSLDPRGIDLLDKLLAYDPINRISARRAAIHPYFQES'
!       assert_equal(@obj.seq, seq)
      end
  
      def test_length
!       assert_equal(@obj.length, 298)
      end
  
      def test_naseq
        seq = 'msgelanykrlekvgegtygvvykaldlrpgqgqrvvalkkirlesedegvpstaireisllkelkddnivrlydivhsdahklylvfefldldlkrymegipkdqplgadivkkfmmqlckgiaychshrilhrdlkpqnllinkdgnlklgdfglarafgvplraytheivtlwyrapevllggkqystgvdtwsigcifaemcnrkpifsgdseidqifkifrvlgtpneaiwpdivylpdfkpsfpqwrrkdlsqvvpsldprgidlldkllaydpinrisarraaihpyfqes'
!       assert_equal(@obj.naseq, seq)
      end
  
      def test_nalen
!       assert_equal(@obj.nalen, 298)
      end
  
      def test_aaseq
        seq = "MSGELANYKRLEKVGEGTYGVVYKALDLRPGQGQRVVALKKIRLESEDEGVPSTAIREISLLKELKDDNIVRLYDIVHSDAHKLYLVFEFLDLDLKRYMEGIPKDQPLGADIVKKFMMQLCKGIAYCHSHRILHRDLKPQNLLINKDGNLKLGDFGLARAFGVPLRAYTHEIVTLWYRAPEVLLGGKQYSTGVDTWSIGCIFAEMCNRKPIFSGDSEIDQIFKIFRVLGTPNEAIWPDIVYLPDFKPSFPQWRRKDLSQVVPSLDPRGIDLLDKLLAYDPINRISARRAAIHPYFQES"
!       assert_equal(@obj.aaseq, seq)
      end
  
      def test_aalen
!       assert_equal(@obj.aalen, 298)
      end
  
      def test_identifiers
!       assert_equal(@obj.identifiers, '')
      end
  
      def test_gi
!       assert_equal(@obj.gi, '')
      end
  
      def test_accession
!       assert_equal(@obj.accession, '')
      end
  
      def test_accessions
!       assert_equal(@obj.accessions, '')
      end
  
      def test_acc_version
!       assert_equal(@obj.acc_version, '')
      end
  
      def test_locus
!       assert_equal(@obj.locus, '')
      end
  
--- 68,137 ----
      def test_entry
        data = ">sce:YBR160W  CDC28, SRM5; cyclin-dependent protein kinase catalytic subunit [EC:2.7.1.-] [SP:CC28_YEAST]\nMSGELANYKRLEKVGEGTYGVVYKALDLRPGQGQRVVALKKIRLESEDEG\nVPSTAIREISLLKELKDDNIVRLYDIVHSDAHKLYLVFEFLDLDLKRYME\nGIPKDQPLGADIVKKFMMQLCKGIAYCHSHRILHRDLKPQNLLINKDGNL\nKLGDFGLARAFGVPLRAYTHEIVTLWYRAPEVLLGGKQYSTGVDTWSIGC\nIFAEMCNRKPIFSGDSEIDQIFKIFRVLGTPNEAIWPDIVYLPDFKPSFP\nQWRRKDLSQVVPSLDPRGIDLLDKLLAYDPINRISARRAAIHPYFQES\n"
!       assert_equal(data, @obj.entry)
      end
  
      def test_entry_id
!       assert_equal('sce:YBR160W', @obj.entry_id)
      end
  
      def test_definition
        data = "sce:YBR160W  CDC28, SRM5; cyclin-dependent protein kinase catalytic subunit [EC:2.7.1.-] [SP:CC28_YEAST]"
!       assert_equal(data, @obj.definition)
      end
  
      def test_data
        data = "\nMSGELANYKRLEKVGEGTYGVVYKALDLRPGQGQRVVALKKIRLESEDEG\nVPSTAIREISLLKELKDDNIVRLYDIVHSDAHKLYLVFEFLDLDLKRYME\nGIPKDQPLGADIVKKFMMQLCKGIAYCHSHRILHRDLKPQNLLINKDGNL\nKLGDFGLARAFGVPLRAYTHEIVTLWYRAPEVLLGGKQYSTGVDTWSIGC\nIFAEMCNRKPIFSGDSEIDQIFKIFRVLGTPNEAIWPDIVYLPDFKPSFP\nQWRRKDLSQVVPSLDPRGIDLLDKLLAYDPINRISARRAAIHPYFQES\n"
!       assert_equal(data, @obj.data)
      end
  
      def test_seq
        seq = 'MSGELANYKRLEKVGEGTYGVVYKALDLRPGQGQRVVALKKIRLESEDEGVPSTAIREISLLKELKDDNIVRLYDIVHSDAHKLYLVFEFLDLDLKRYMEGIPKDQPLGADIVKKFMMQLCKGIAYCHSHRILHRDLKPQNLLINKDGNLKLGDFGLARAFGVPLRAYTHEIVTLWYRAPEVLLGGKQYSTGVDTWSIGCIFAEMCNRKPIFSGDSEIDQIFKIFRVLGTPNEAIWPDIVYLPDFKPSFPQWRRKDLSQVVPSLDPRGIDLLDKLLAYDPINRISARRAAIHPYFQES'
!       assert_equal(seq, @obj.seq)
      end
  
      def test_length
!       assert_equal(298, @obj.length)
      end
  
      def test_naseq
        seq = 'msgelanykrlekvgegtygvvykaldlrpgqgqrvvalkkirlesedegvpstaireisllkelkddnivrlydivhsdahklylvfefldldlkrymegipkdqplgadivkkfmmqlckgiaychshrilhrdlkpqnllinkdgnlklgdfglarafgvplraytheivtlwyrapevllggkqystgvdtwsigcifaemcnrkpifsgdseidqifkifrvlgtpneaiwpdivylpdfkpsfpqwrrkdlsqvvpsldprgidlldkllaydpinrisarraaihpyfqes'
!       assert_equal(seq, @obj.naseq)
      end
  
      def test_nalen
!       assert_equal(298, @obj.nalen)
      end
  
      def test_aaseq
        seq = "MSGELANYKRLEKVGEGTYGVVYKALDLRPGQGQRVVALKKIRLESEDEGVPSTAIREISLLKELKDDNIVRLYDIVHSDAHKLYLVFEFLDLDLKRYMEGIPKDQPLGADIVKKFMMQLCKGIAYCHSHRILHRDLKPQNLLINKDGNLKLGDFGLARAFGVPLRAYTHEIVTLWYRAPEVLLGGKQYSTGVDTWSIGCIFAEMCNRKPIFSGDSEIDQIFKIFRVLGTPNEAIWPDIVYLPDFKPSFPQWRRKDLSQVVPSLDPRGIDLLDKLLAYDPINRISARRAAIHPYFQES"
!       assert_equal(seq, @obj.aaseq)
      end
  
      def test_aalen
!       assert_equal(298, @obj.aalen)
      end
  
      def test_identifiers
!       assert_equal('', @obj.identifiers)
      end
  
      def test_gi
!       assert_equal('', @obj.gi)
      end
  
      def test_accession
!       assert_equal('', @obj.accession)
      end
  
      def test_accessions
!       assert_equal('', @obj.accessions)
      end
  
      def test_acc_version
!       assert_equal('', @obj.acc_version)
      end
  
      def test_locus
!       assert_equal('', @obj.locus)
      end
  
***************
*** 151,172 ****
  
      def test_entry
!       assert_equal(@obj.entry, ">CRA3575282.F\n24 15 23 29 20 13 20 21 21 23 22 25 13 22 17 15 25 27 32 26  \n32 29 29 25\n")
      end
  
      def test_entry_id
!       assert_equal(@obj.entry_id, 'CRA3575282.F') 
      end
  
      def test_definition
!       assert_equal(@obj.definition, 'CRA3575282.F')
      end
  
      def test_data
        data = [24, 15, 23, 29, 20, 13, 20, 21, 21, 23, 22, 25, 13, 22, 17, 15, 25, 27, 32, 26, 32, 29, 29, 25]
!       assert_equal(@obj.data, data)
      end
  
      def test_length
!       assert_equal(@obj.length, 24)
      end
  
--- 151,172 ----
  
      def test_entry
!       assert_equal(">CRA3575282.F\n24 15 23 29 20 13 20 21 21 23 22 25 13 22 17 15 25 27 32 26  \n32 29 29 25\n", @obj.entry)
      end
  
      def test_entry_id
!       assert_equal('CRA3575282.F', @obj.entry_id) 
      end
  
      def test_definition
!       assert_equal('CRA3575282.F', @obj.definition)
      end
  
      def test_data
        data = [24, 15, 23, 29, 20, 13, 20, 21, 21, 23, 22, 25, 13, 22, 17, 15, 25, 27, 32, 26, 32, 29, 29, 25]
!       assert_equal(data, @obj.data)
      end
  
      def test_length
!       assert_equal(24, @obj.length)
      end