[BioRuby-cvs] bioruby/lib bio.rb,1.57,1.58

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib
In directory pub.open-bio.org:/tmp/cvs-serv9041/lib

Modified Files:
	bio.rb 
Log Message:
* Bio::TF* is renamed to Bio::TRANSFAC::*


Index: bio.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio.rb,v
retrieving revision 1.57
retrieving revision 1.58
diff -C2 -d -r1.57 -r1.58
*** bio.rb	4 Nov 2005 17:34:42 -0000	1.57
--- bio.rb	28 Nov 2005 04:57:32 -0000	1.58
***************
*** 133,146 ****
    autoload :FastaDefline,       'bio/db/fasta' # change to FastaFormat::Defline
    autoload :GFF,            'bio/db/gff'
-   autoload :GFF2,           'bio/db/gff'       # change to GFF::GFF2, improve
-   autoload :GFF3,           'bio/db/gff'       # change to GFF::GFF3, improve
    autoload :AAindex,        'bio/db/aaindex'
    autoload :TRANSFAC,       'bio/db/transfac'
-   autoload :TFMATRIX,       'bio/db/transfac'  # change to TRANSFAC::MATRIX
-   autoload :TFSITE,         'bio/db/transfac'  # change to TRANSFAC::SITE
-   autoload :TFFACTOR,       'bio/db/transfac'  # change to TRANSFAC::FACTOR
-   autoload :TFCELL,         'bio/db/transfac'  # change to TRANSFAC::CELL
-   autoload :TFCLASS,        'bio/db/transfac'  # change to TRANSFAC::CLASS
-   autoload :TFGENE,         'bio/db/transfac'  # change to TRANSFAC::GENE
    autoload :PROSITE,        'bio/db/prosite'
    autoload :LITDB,          'bio/db/litdb'
--- 133,138 ----