[BioRuby-cvs] bioruby/doc Changes-0.7.rd,1.6,1.7
Katayama Toshiaki
k at pub.open-bio.org
Tue Nov 15 07:43:39 EST 2005
Update of /home/repository/bioruby/bioruby/doc
In directory pub.open-bio.org:/tmp/cvs-serv31273/doc
Modified Files:
Changes-0.7.rd
Log Message:
* Constans are renamed to UPPERCASE (incompatible change)
Index: Changes-0.7.rd
===================================================================
RCS file: /home/repository/bioruby/bioruby/doc/Changes-0.7.rd,v
retrieving revision 1.6
retrieving revision 1.7
diff -C2 -d -r1.6 -r1.7
*** Changes-0.7.rd 14 Nov 2005 05:49:24 -0000 1.6
--- Changes-0.7.rd 15 Nov 2005 12:43:37 -0000 1.7
***************
*** 68,71 ****
--- 68,104 ----
BLAST and FASTA search.
+ --- Bio::NucleicAcid
+
+ Bio::NucleicAcid::Names and Bio::NucleicAcid::Weight no longer exists.
+
+ Bio::NucleicAcid::Names is renamed to Bio::NucleicAcid::Data::NAMES and
+ can be accessed by Bio::NucleicAcid#names, Bio::NucleicAcid.names methods
+ and Bio::NucleicAcid::WEIGHT hash as the Data module is included.
+
+ Bio::NucleicAcid::Weight is renamed to Bio::NucleicAcid::Data::Weight and
+ can be accessed by Bio::NucleicAcid#weight, Bio::NucleicAcid.weight methods
+ and Bio::NucleicAcid::WEIGHT hash as the Data module is included.
+
+ --- Bio::AminoAcid
+
+ Bio::AminoAcid::Names and Bio::AminoAcid::Weight no longer exists.
+
+ Bio::AminoAcid::Names is renamed to Bio::AminoAcid::Data::NAMES and
+ can be accessed by Bio::AminoAcid#names, Bio::AminoAcid.names methods
+ and Bio::AminoAcid::WEIGHT hash as the Data module is included.
+
+ Bio::AminoAcid::Weight is renamed to Bio::AminoAcid::Data::Weight and
+ can be accessed by Bio::AminoAcid#weight, Bio::AminoAcid.weight methods
+ and Bio::AminoAcid::WEIGHT hash as the Data module is included.
+
+ --- Bio::CodonTable
+
+ Bio::CodonTable::Tables, Bio::CodonTable::Definitions,
+ Bio::CodonTable::Starts, and Bio::CodonTable::Stops
+ are renamed to
+ Bio::CodonTable::TABLES, Bio::CodonTable::DEFINITIONS,
+ Bio::CodonTable::STARTS, and Bio::CodonTable::STOPS
+ respectively.
+
--- Bio::KEGG::Microarrays, Bio::KEGG::Microarray
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