[BioRuby-cvs] bioruby/lib/bio/data na.rb,0.17,0.18

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/lib/bio/data
In directory pub.open-bio.org:/tmp/cvs-serv24413/lib/bio/data

Modified Files:
	na.rb 
Log Message:
* names other than atgc are added for bioruby shell


Index: na.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/data/na.rb,v
retrieving revision 0.17
retrieving revision 0.18
diff -C2 -d -r0.17 -r0.18
*** na.rb	15 Nov 2005 12:43:37 -0000	0.17
--- na.rb	25 Nov 2005 15:59:29 -0000	0.18
***************
*** 70,84 ****
      NAMES = {
  
!       'y'	=> '[tc]',	# pYrimidine
!       'r'	=> '[ag]',	# puRine
!       'w'	=> '[at]',	# Weak
!       's'	=> '[gc]',	# Strong
!       'k'	=> '[tg]',	# Keto
!       'm'	=> '[ac]',	# aroMatic
  
!       'b'	=> '[tgc]',	# not A
!       'd'	=> '[atg]',	# not C
!       'h'	=> '[atc]',	# not G
!       'v'	=> '[agc]',	# not T
  
        'n'	=> '[atgc]',
--- 70,84 ----
      NAMES = {
  
!       'y'	=> '[tc]',
!       'r'	=> '[ag]',
!       'w'	=> '[at]',
!       's'	=> '[gc]',
!       'k'	=> '[tg]',
!       'm'	=> '[ac]',
  
!       'b'	=> '[tgc]',
!       'd'	=> '[atg]',
!       'h'	=> '[atc]',
!       'v'	=> '[agc]',
  
        'n'	=> '[atgc]',
***************
*** 90,99 ****
        'u'	=> 'u',
  
!       'A'	=> 'adenine',
!       'T'	=> 'thymine',
!       'G'	=> 'guanine',
!       'C'	=> 'cytosine',
!       'U'	=> 'uracil',
  
      }
  
--- 90,110 ----
        'u'	=> 'u',
  
!       'A'	=> 'Adenine',
!       'T'	=> 'Thymine',
!       'G'	=> 'Guanine',
!       'C'	=> 'Cytosine',
!       'U'	=> 'Uracil',
! 
!       'Y'	=> 'pYrimidine',
!       'R'	=> 'puRine',
!       'W'	=> 'Weak',
!       'S'	=> 'Strong',
!       'K'	=> 'Keto',
!       'M'	=> 'aroMatic',
  
+       'B'	=> 'not A',
+       'D'	=> 'not C',
+       'H'	=> 'not G',
+       'V'	=> 'not T',
      }