[BioRuby-cvs] bioruby/doc Changes-0.7.rd,1.3,1.4

[Katayama Toshiaki]

Update of /home/repository/bioruby/bioruby/doc
In directory pub.open-bio.org:/tmp/cvs-serv31463/doc

Modified Files:
	Changes-0.7.rd 
Log Message:
* added notification of removal of Bio::Sequence#blast and fasta methods


Index: Changes-0.7.rd
===================================================================
RCS file: /home/repository/bioruby/bioruby/doc/Changes-0.7.rd,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** Changes-0.7.rd	4 Nov 2005 17:33:29 -0000	1.3
--- Changes-0.7.rd	5 Nov 2005 10:21:47 -0000	1.4
***************
*** 53,57 ****
  * Bio::Sequence::NA#gc (was aliased to gc_percent) is removed
  
! In BioRuby, GC% is rounded to one decimal place.  However, how many digits
  should be left when rounding the value is not clear and as the GC% is an
  rough measure by its nature, we have changed to return integer part only.
--- 53,57 ----
  * Bio::Sequence::NA#gc (was aliased to gc_percent) is removed
  
! Previously, GC% is rounded to one decimal place.  However, how many digits
  should be left when rounding the value is not clear and as the GC% is an
  rough measure by its nature, we have changed to return integer part only.
***************
*** 59,64 ****
  'composition' method by your own criteria.
  
! The 'gc' method is removed as the method name doesn't represent its value
! is ambiguous.
  
  --- Bio::KEGG::Microarrays, Bio::KEGG::Microarray
--- 59,70 ----
  'composition' method by your own criteria.
  
! Also, the 'gc' method is removed as the method name doesn't represent
! its value is ambiguous.
! 
! * Bio::Sequence#blast
! * Bio::Sequence#fasta
! 
! These two methods are removed.  Use Bio::Blast and Bio::Fasta to execute
! BLAST and FASTA search.
  
  --- Bio::KEGG::Microarrays, Bio::KEGG::Microarray