[BioRuby-cvs] bioruby/lib/bio/appl clustalw.rb, 1.8, 1.9 sim4.rb, 1.3, 1.4 mafft.rb, 1.7, 1.8

[Naohisa Goto]

Update of /home/repository/bioruby/bioruby/lib/bio/appl
In directory pub.open-bio.org:/tmp/cvs-serv6747/d

Modified Files:
	clustalw.rb sim4.rb mafft.rb 
Log Message:
changed RDoc: removed many #:nodoc:
fixed some RDoc syntax mistakes.


Index: sim4.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/sim4.rb,v
retrieving revision 1.3
retrieving revision 1.4
diff -C2 -d -r1.3 -r1.4
*** sim4.rb	31 Oct 2005 20:03:41 -0000	1.3
--- sim4.rb	1 Nov 2005 05:32:23 -0000	1.4
***************
*** 35,39 ****
  require 'tempfile'
  
! module Bio #:nodoc:
  
    # The sim4 execution wrapper class.
--- 35,39 ----
  require 'tempfile'
  
! module Bio
  
    # The sim4 execution wrapper class.

Index: clustalw.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/clustalw.rb,v
retrieving revision 1.8
retrieving revision 1.9
diff -C2 -d -r1.8 -r1.9
*** clustalw.rb	31 Oct 2005 19:46:19 -0000	1.8
--- clustalw.rb	1 Nov 2005 05:32:23 -0000	1.9
***************
*** 45,49 ****
  require 'bio/alignment'
  
! module Bio #:nodoc:
  
    # Bio::ClustalW is a CLUSTAL W execution wrapper class.
--- 45,49 ----
  require 'bio/alignment'
  
! module Bio
  
    # Bio::ClustalW is a CLUSTAL W execution wrapper class.

Index: mafft.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/appl/mafft.rb,v
retrieving revision 1.7
retrieving revision 1.8
diff -C2 -d -r1.7 -r1.8
*** mafft.rb	31 Oct 2005 13:17:18 -0000	1.7
--- mafft.rb	1 Nov 2005 05:32:23 -0000	1.8
***************
*** 48,52 ****
  require 'open3'
  
! module Bio #:nodoc:
  
    # Bio::MAFFT is a wrapper class to execute MAFFT.
--- 48,52 ----
  require 'open3'
  
! module Bio
  
    # Bio::MAFFT is a wrapper class to execute MAFFT.