June 2011 Archives by thread

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Starting: Wed Jun 1 01:42:37 UTC 2011
Ending: Thu Jun 30 22:37:54 UTC 2011
Messages: 164

• [Bioperl-l] Reading protein from file - error   Florent Angly
• [Bioperl-l] bioperl graphics   Shachi Gahoi
  • [Bioperl-l] bioperl graphics   Scott Cain
• [Bioperl-l] Error calling alignment method   Roy Chaudhuri
  • [Bioperl-l] Error calling alignment method   Lorenzo Carretero Paulet
    • [Bioperl-l] Error calling alignment method   Chris Fields
      • [Bioperl-l] Error calling alignment method   Lorenzo Carretero Paulet
• [Bioperl-l] questions about the bioperl module Bio::PopGen::Statistics   lvu.jun
  • [Bioperl-l] questions about the bioperl module Bio::PopGen::Statistics   Warren W. Kretzschmar
• [Bioperl-l] Problem installing BioPerl   Sophie
  • [Bioperl-l] Problem installing BioPerl   Scott Cain
    • [Bioperl-l] Problem installing BioPerl   Chris Fields
      • [Bioperl-l] Problem installing BioPerl   Sophie
      • [Bioperl-l] Problem installing BioPerl   Scott Cain
      • [Bioperl-l] Problem installing BioPerl   Sophie
      • [Bioperl-l] Problem installing BioPerl   Chris Fields
      • [Bioperl-l] Problem installing BioPerl   Sophie
  • [Bioperl-l] Problem installing BioPerl   tejaminnu
• [Bioperl-l] Early registration for BOSC ends tomorrow, Friday June 3   Brad Chapman
• [Bioperl-l] use of Bio::Graphics::Glyph::primers   Shachi Gahoi
  • [Bioperl-l] use of Bio::Graphics::Glyph::primers   Scott Cain
• [Bioperl-l] adding tags to BAM aligned reads   Bilbo
• [Bioperl-l] Bioperl graphics   Shachi Gahoi
  • [Bioperl-l] Bioperl graphics   Scott Cain
    • [Bioperl-l] Bioperl graphics   Chris Fields
      • [Bioperl-l] Bioperl graphics   Scott Cain
      • [Bioperl-l] Bioperl graphics   Smithies, Russell
      • [Bioperl-l] Bioperl graphics   Shachi Gahoi
      • [Bioperl-l] Bioperl graphics   Smithies, Russell
      • [Bioperl-l] Bioperl graphics   Smithies, Russell
      • [Bioperl-l] Bioperl graphics   Shachi Gahoi
      • [Bioperl-l] Bioperl graphics   Smithies, Russell
      • [Bioperl-l] Bioperl graphics   Shachi Gahoi
• [Bioperl-l] adding tags   Jonas Zierer
  • [Bioperl-l] adding tags   Frank Schwach
• [Bioperl-l] Using Bio::SeqUtils->cat()   Trina McMahon
  • [Bioperl-l] Using Bio::SeqUtils->cat()   Roy Chaudhuri
  • [Bioperl-l] Using Bio::SeqUtils->cat()   Brian Osborne
• [Bioperl-l] Using Bio::SeqUtils->cat()   Roy Chaudhuri
• [Bioperl-l] Installing Bioperl 1.6.1 on Mac OS 10.6.7   Trina McMahon
  • [Bioperl-l] Installing Bioperl 1.6.1 on Mac OS 10.6.7   Chris Fields
    • [Bioperl-l] Installing Bioperl 1.6.1 on Mac OS 10.6.7   Trina McMahon
  • [Bioperl-l] Installing Bioperl 1.6.1 on Mac OS 10.6.7   tejaminnu
    • [Bioperl-l] Installing Bioperl 1.6.1 on Mac OS 10.6.7   Liam Elbourne
• [Bioperl-l] Slightly OT - how to create a blast archive file?   Smithies, Russell
  • [Bioperl-l] model 3 on Codeml.pm   Lorenzo Carretero
    • [Bioperl-l] model 3 on Codeml.pm   Jason Stajich
      • [Bioperl-l] model 3 on Codeml.pm   Lorenzo Carretero
      • [Bioperl-l] model 3 on Codeml.pm   Lorenzo Carretero Paulet
      • [Bioperl-l] model 3 on Codeml.pm   Jason Stajich
      • [Bioperl-l] model 3 on Codeml.pm   Lorenzo Carretero Paulet
      • [Bioperl-l] model 3 on Codeml.pm   Jason Stajich
      • [Bioperl-l] model 3 on Codeml.pm   Lorenzo Carretero
      • [Bioperl-l] model 3 on Codeml.pm   Jason Stajich
      • [Bioperl-l] model 3 on Codeml.pm   Lorenzo Carretero
• [Bioperl-l] read coverage   Jonas Zierer
• [Bioperl-l] GSoC Progess Update   Sheena Scroggins
• [Bioperl-l] problem in PDF::Create module   Shachi Gahoi
  • [Bioperl-l] problem in PDF::Create module   Dave Howorth
    • [Bioperl-l] problem in PDF::Create module   Shachi Gahoi
• [Bioperl-l] Bio::AlignIO::Mase   Tristan Lefebure
  • [Bioperl-l] Bio::AlignIO::Mase   Chris Fields
  • [Bioperl-l] Bio::AlignIO::Mase   Jun Yin
    • [Bioperl-l] Bio::AlignIO::Mase   Chris Fields
  • [Bioperl-l] Bio::AlignIO::Mase   Jason Stajich
    • [Bioperl-l] Bio::AlignIO::Mase   Tristan Lefebure
      • [Bioperl-l] Bio::AlignIO::Mase   Jason Stajich
      • [Bioperl-l] Bio::AlignIO::Mase   Chris Fields
      • [Bioperl-l] Bio::AlignIO::Mase   Tristan Lefebure
• [Bioperl-l] reading sam files   Jonas Zierer
  • [Bioperl-l] reading sam files   Scott Cain
    • [Bioperl-l] reading sam files   Jonas Zierer
      • [Bioperl-l] reading sam files   Scott Cain
      • [Bioperl-l] reading sam files   Chris Fields
      • [Bioperl-l] reading sam files   Jonas Zierer
      • [Bioperl-l] reading sam files   Peter Cock
      • [Bioperl-l] reading sam files   Jonas Zierer
• [Bioperl-l] Bio::DB::EUtilities and RefSeq   Senthil Kumar M
  • [Bioperl-l] Bio::DB::EUtilities and RefSeq   Chris Fields
    • [Bioperl-l] Bio::DB::EUtilities and RefSeq   Senthil Kumar M
• [Bioperl-l] A question about Bioperl SeqUtil   Chris Fields
  • [Bioperl-l] passing twice a codon MSA to codeml factory   Lorenzo Carretero
    • [Bioperl-l] Mapping GO slim terms   Lorenzo Carretero Paulet
      • [Bioperl-l] Mapping GO slim terms   Jason Stajich
      • [Bioperl-l] Mapping GO slim terms   Lorenzo Carretero Paulet
    • [Bioperl-l] passing twice a codon MSA to codeml factory   Jason Stajich
      • [Bioperl-l] passing twice a codon MSA to codeml factory   Chris Fields
      • [Bioperl-l] passing twice a codon MSA to codeml factory   Lorenzo Carretero Paulet
  • [Bioperl-l] A question about Bioperl SeqUtil   Hui Liu
    • [Bioperl-l] A question about Bioperl SeqUtil   Smithies, Russell
• [Bioperl-l] API for frame() has changed??   Jordi Durban
  • [Bioperl-l] API for frame() has changed??   Brian Osborne
• [Bioperl-l] Filtering Hits and HSP   josh katz
• [Bioperl-l] coverage percentage   Rondon Neto
• [Bioperl-l] BioPerl and undefined value   Flora Fan
  • [Bioperl-l] BioPerl and undefined value   Scott Cain
    • [Bioperl-l] BioPerl and undefined value   Roy Chaudhuri
• [Bioperl-l] problem in inserting image in pdf file   Shachi Gahoi
  • [Bioperl-l] problem in inserting image in pdf file   Rutger Vos
  • [Bioperl-l] problem in inserting image in pdf file   Chris Fields
    • [Bioperl-l] problem in inserting image in pdf file   Dave Howorth
• [Bioperl-l] blast2sam Bio::AlignIO::sam was this ever implemented?   Albert Vilella
• [Bioperl-l] problem in Bio::Graphics module   Shachi Gahoi
  • [Bioperl-l] problem in Bio::Graphics module   Roy Chaudhuri
• [Bioperl-l] Per-column conservation of multiple alignment in Perl   Chad Davis
  • [Bioperl-l] Per-column conservation of multiple alignment in Perl   Jun Yin
• [Bioperl-l] upgrading GBrowse from 2.08 to 2.38, problems with BioPerl 1.6.901 upgrade   Matthew Conte
  • [Bioperl-l] upgrading GBrowse from 2.08 to 2.38, problems with BioPerl 1.6.901 upgrade   Chris Fields
• [Bioperl-l] resources for read simulation?   Ross KK Leung
  • [Bioperl-l] resources for read simulation?   Florent Angly
• [Bioperl-l] Split genomes   anna_sh
  • [Bioperl-l] Split genomes   Smithies, Russell
  • [Bioperl-l] Split genomes   anna_sh
    • [Bioperl-l] Split genomes   Brian Osborne
• [Bioperl-l] AlignIO   ashwoo
  • [Bioperl-l] AlignIO   Chad Davis
    • [Bioperl-l] AlignIO   Jason Stajich
• [Bioperl-l] bp_classify_hits_kingdom.pl   Jason Stajich
  • [Bioperl-l] bp_classify_hits_kingdom.pl   Bernd Web
    • [Bioperl-l] bp_classify_hits_kingdom.pl   Jason Stajich
      • [Bioperl-l] bp_classify_hits_kingdom.pl   Bernd Web
      • [Bioperl-l] bp_classify_hits_kingdom.pl   Jason Stajich
  • [Bioperl-l] bp_classify_hits_kingdom.pl   Chris Fields
• [Bioperl-l] UTR regions in LiveSeq   htafer
  • [Bioperl-l] UTR regions in LiveSeq   Jason Stajich
• [Bioperl-l] Bioperl module for simulated reads   Florent Angly
  • [Bioperl-l] Bioperl module for simulated reads   Jason Stajich
• [Bioperl-l] Reg. Objects created by default on Bioperl   ravikumar jayachandran
  • [Bioperl-l] Reg. Objects created by default on Bioperl   Jason Stajich
• [Bioperl-l] Building CMs from Rfam.full?   Brian Osborne
  • [Bioperl-l] Building CMs from Rfam.full?   Brian Osborne
  • [Bioperl-l] Building CMs from Rfam.full?   Chris Fields
• [Bioperl-l] retrieve refseq ids from UIDs   Carnë Draug
  • [Bioperl-l] retrieve refseq ids from UIDs   Smithies, Russell
    • [Bioperl-l] retrieve refseq ids from UIDs   Carnë Draug
      • [Bioperl-l] retrieve refseq ids from UIDs   Smithies, Russell
      • [Bioperl-l] retrieve refseq ids from UIDs   Carnë Draug
      • [Bioperl-l] retrieve refseq ids from UIDs   Smithies, Russell
• [Bioperl-l] Make edits to a large sequence   wannymahoots
  • [Bioperl-l] Make edits to a large sequence   Dave Messina
  • [Bioperl-l] Make edits to a large sequence   Kevin Brown
• [Bioperl-l] problem with Bio::Align::Utilities - aa_to_dna_aln   Sofia
  • [Bioperl-l] problem with Bio::Align::Utilities - aa_to_dna_aln   Chris Fields
  • [Bioperl-l] problem with Bio::Align::Utilities - aa_to_dna_aln   Jason Stajich
    • [Bioperl-l] problem with Bio::Align::Utilities - aa_to_dna_aln   Sofia
• [Bioperl-l] Invitation to connect on LinkedIn   Radhouane Aniba, PhD - (aradwen at gmail.com) via LinkedIn
• [Bioperl-l] Runnig bl2seq throws error + Failure to parse BlastResult   Das, Abhiram
  • [Bioperl-l] Runnig bl2seq throws error + Failure to parse BlastResult   Jason Stajich
    • [Bioperl-l] Runnig bl2seq throws error + Failure to parse BlastResult   Das, Abhiram
      • [Bioperl-l] Runnig bl2seq throws error + Failure to parse BlastResult   Jason Stajich
  • [Bioperl-l] Runnig bl2seq throws error + Failure to parse BlastResult   Smithies, Russell
• [Bioperl-l] Runnig bl2seq throws error + Failure to parse BlastResult   Jason Stajich
• [Bioperl-l] running a simple example with Bio::Tools::Run::BWA   Adam Witney
• [Bioperl-l] Bio::Species bug report - cannot handle scientific names containing brackets   Nick Langridge
  • [Bioperl-l] Bio::Species bug report - cannot handle scientific names containing brackets   Chris Fields
• [Bioperl-l] How (from where) to retrieve FieldInfo objects?   Carnë Draug
  • [Bioperl-l] How (from where) to retrieve FieldInfo objects?   Brian Osborne
    • [Bioperl-l] How (from where) to retrieve FieldInfo objects?   Carnë Draug
      • [Bioperl-l] How (from where) to retrieve FieldInfo objects?   Smithies, Russell
      • [Bioperl-l] How (from where) to retrieve FieldInfo objects?   Carnë Draug
• [Bioperl-l] debian package for bioperl-db and bioperl-ext   randy909
  • [Bioperl-l] debian package for bioperl-db and bioperl-ext   Charles Plessy

Last message date: Thu Jun 30 22:37:54 UTC 2011
Archived on: Mon Jun 16 02:51:39 UTC 2014

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