[Bioperl-l] A question about Bioperl SeqUtil

[Hui Liu]

Hi Chris,
    Sorry. I will send to bioperl List next time. So my current problem is
that large sequence will 'out of memory'  using Bio::SeqUtil. It is of 500Mb
size. Anyway, I will try to do something in my Perl code to divide the
sequences.
     Thanks :-)
Hui
On Sat, Jun 11, 2011 at 6:26 PM, Chris Fields <cjfields at illinois.edu> wrote:

> Hui,
>
> Please email questions to the mail list, not directly to individual
> developers.
>
> You probably could translate whole chromosomes this way, but it might take
> a while.  I would also look at tools like EMBOSS to do this, should be
> faster.
>
> chris
>
> On Jun 11, 2011, at 10:31 AM, Hui Liu wrote:
>
> > Hi Chris,
> >      Now I am having trouble translating large chromosome sequences in 6
> frames. Do you know any available tools that supports large sequence
> translation? Does Bioperl 1.6.90 support that?
> >      Thanks a lot :-)
> > Hui
> > --
> > Nothing shocks me. I'm a scientist.
> >                              -Indiana Jones
>
>


-- 
Nothing shocks me. I'm a scientist.
                             -Indiana Jones