[Bioperl-l] resources for read simulation?

Ross KK Leung ross at cuhk.edu.hk
Sun Jun 19 23:53:07 UTC 2011


Is there any bioperl modules/programs that make short reads out of an input sequence file?

e.g.

input: a genome of 3Mb fasta file
output: a read sequence fasta file with parameters:
i) read length (either fixed, or in a range)
ii) proportion of sampling (e.g. randomly select 30% coverage of the input file)





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