[Bioperl-l] Building CMs from Rfam.full?

Mon Jun 27 16:56:44 UTC 2011

You *should* be able to do this, maybe via combinations of Bio::Index::Stockholm, Bio::AlignIO::stockholm, Bio::Tools::Run::Infernal, and File::Temp (indexing rfam, pulling out ind. alignments into temp files by ID, running cmbuild..)

chris (typing with one hand, child in other. in a cabin in Nova Scotia)

On Jun 27, 2011, at 10:00 AM, Brian Osborne wrote:

> bioperl-l,
> 
> Is there a script or module around that will take Rfam.full (multi-Stockholm file with all alignments) and build each individual *cm file from it, creating separate files?
> 
> Thanks again,
> 
> Brian O.
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