February 2005 Archives by author

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Starting: Tue Feb 1 01:05:20 EST 2005
Ending: Mon Feb 28 11:14:40 EST 2005
Messages: 173

[Bioperl-l] AlignIO and SimpleAlign michael watson (IAH-C)
[Bioperl-l] Error when calling remove_gaps michael watson (IAH-C)
[Bioperl-l] which one and how to configure(blastall) michael watson (IAH-C)
[Bioperl-l] Genbank LOCUS entry Matthias Adams
[Bioperl-l] Genbank LOCUS entry Matthias Adams
[Bioperl-l] Genbank LOCUS entry Matthias Adams
[Bioperl-l] Genbank LOCUS entry Matthias Adams
[Bioperl-l] bioperl on Mac OSX Arya Akmal
[Bioperl-l] bioperl on Mac OSX Arya Akmal
[Bioperl-l] bioperl on Mac OSX Arya Akmal
[Bioperl-l] MSG: acc does not exist, but acc # is OK Arya Akmal
[Bioperl-l] urgent help with AcePerl Paulo Almeida
[Bioperl-l] a basic question Paulo Almeida
[Bioperl-l] XML::Parse line 187 Julie Beaulieu
[Bioperl-l] TGA as U in selenocystine fullCDS Ewan Birney
[Bioperl-l] Proposal for bio-perl updates: ACE assembly file Raoul Jean Pierre Bonnal
[Bioperl-l] IMGT parsing Alex Brown
[Bioperl-l] IMGT parsing Alex Brown
[Bioperl-l] Bio::OntologyIO choking on current GO Scott Cain
[Bioperl-l] help on installation of bioperl in slave nodes. Chris Dagdigian
[Bioperl-l] Important info for all Open-Bio affiliated developers (people with CVS write access...) Chris Dagdigian
[Bioperl-l] gff to embl or genbank Jianli Dai
[Bioperl-l] a basic question Sean Davis
[Bioperl-l] RE: [Gmod-gbrowse] features not displaying Allen Day
[Bioperl-l] The Feature changes which have broken compatibility Allen Day
[Bioperl-l] The Feature changes which have broken compatibility Allen Day
[Bioperl-l] AGP parser Ben Faga
[Bioperl-l] email issue on the listserv Chris Fields
[Bioperl-l] Bio::SeqIO::multifasta Jean-Marc Frigerio
[Bioperl-l] Remove gap only columns from alignment Goel, Manisha
[Bioperl-l] SeqIO bug? Ryan Golhar
[Bioperl-l] Bio::Tools::Spidey::Results.pm bug fix Ryan Golhar
[Bioperl-l] How to get the Accession # of a DNA sequence from the Protein GI or Accession # Ryan Golhar
[Bioperl-l] urgent help with AcePerl Todd Harris
[Bioperl-l] search by keyword Alisha Holloway
[Bioperl-l] bioperl.pod one revision behind? Johnson, Nathan
[Bioperl-l] What format is this? Supported with BioSeq::IO? Andreas Kahari
[Bioperl-l] Bio::Tools::Run::Alignment::Probcons Andreas Kahari
[Bioperl-l] Bio::Tools::Run::Alignment::Probcons Andreas Kahari
[Bioperl-l] help for parsing MAST output Stefan Kirov
[Bioperl-l] help for parsing MAST output Stefan Kirov
[Bioperl-l] What format is this? Supported with BioSeq::IO? Stefan Kirov
[Bioperl-l] TRANSFAC Bio::Matrix::PSM support Stefan Kirov
[Bioperl-l] Parseing tRNA sequences out of genbank file Hilmar Lapp
[Bioperl-l] The Feature changes which have broken compatibility Hilmar Lapp
[Bioperl-l] Genbank LOCUS entry Hilmar Lapp
[Bioperl-l] Genbank LOCUS entry Hilmar Lapp
[Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? Hilmar Lapp
[Bioperl-l] Bio::OntologyIO choking on current GO Hilmar Lapp
[Bioperl-l] load_seqdatabase won't Hilmar Lapp
[Bioperl-l] load_seqdatabase won't Hilmar Lapp
[Bioperl-l] Another small bump Hilmar Lapp
[Bioperl-l] ASN.1 and BioPerl ? Hilmar Lapp
[Bioperl-l] ASN1 and BioPerl (and XML too) Hilmar Lapp
[Bioperl-l] capture of STDOUT from write_seq? Heikki Lehvaslaiho
[Bioperl-l] SeqIO bug? Heikki Lehvaslaiho
[Bioperl-l] TGA as U in selenocystine fullCDS Heikki Lehvaslaiho
[Bioperl-l] TGA as U in selenocystine fullCDS Heikki Lehvaslaiho
[Bioperl-l] bioperl.pod one revision behind? Heikki Lehvaslaiho
[Bioperl-l] modules and scripts with no POD documentation Heikki Lehvaslaiho
[Bioperl-l] bioperl on Mac OSX Madeleine Lemieux
[Bioperl-l] bioperl on Mac OSX Madeleine Lemieux
[Bioperl-l] "no data for midline" still occurs with bioperl 1.5 Madeleine Lemieux
[Bioperl-l] Bio::DB::GenBank Allen Liu
[Bioperl-l] RE: [Gmod-gbrowse] features not displaying Marc Logghe
[Bioperl-l] RE: [Gmod-gbrowse] features not displaying Marc Logghe
[Bioperl-l] RE: [Gmod-gbrowse] features not displaying Marc Logghe
[Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? Marc Logghe
[Bioperl-l] capture of STDOUT from write_seq? Marc Logghe
[Bioperl-l] RE: [Gmod-gbrowse] features not displaying Marc Logghe
[Bioperl-l] ASN.1 and BioPerl ? Marc Logghe
[Bioperl-l] bioperl-ext make problems Aaron J. Mackey
[Bioperl-l] bioperl-ext make problems Aaron J. Mackey
[Bioperl-l] Entrez Gene and bioperl-db Stephen L. Mathias
[Bioperl-l] ASN.1 and BioPerl ? Stephen L. Mathias
[Bioperl-l] bioperl.pod one revision behind? Phillip San Miguel
[Bioperl-l] bioperl.pod one revision behind? Phillip San Miguel
[Bioperl-l] How to get the Accession # of a DNA sequence from the Protein GI or Accession # Barry Moore
[Bioperl-l] [How to add features in genbank flat file] Sebastien Moretti
[Bioperl-l] The Feature changes which have broken compatibility Chris Mungall
[Bioperl-l] The Feature changes which have broken compatibility Chris Mungall
[Bioperl-l] ASN.1 and BioPerl ? Chris Mungall
[Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? Mike Muratet
[Bioperl-l] EMBOSS/water interface Mike Muratet
[Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? Mike Muratet
[Bioperl-l] EMBOSS/water interface Mike Muratet
[Bioperl-l] EMBOSS/water interface Mike Muratet
[Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? Mike Muratet
[Bioperl-l] Obsolete method call in Bio/DB/SQL/SeqAdaptor.pm? Mike Muratet
[Bioperl-l] load_seqdatabase won't Mike Muratet
[Bioperl-l] load_seqdatabase won't Mike Muratet
[Bioperl-l] Another small bump Mike Muratet
[Bioperl-l] Another small bump Mike Muratet
[Bioperl-l] Re: Bioperl-l Digest, Vol 22, Issue 8 Todd Naumann
[Bioperl-l] volunteers needed for Bioperl Brian Osborne
[Bioperl-l] Genbank LOCUS entry Brian Osborne
[Bioperl-l] search by keyword Brian Osborne
[Bioperl-l] getting database info from the blast report Brian Osborne
[Bioperl-l] Another small bump Brian Osborne
[Bioperl-l] Another small bump Brian Osborne
[Bioperl-l] IMGT parsing Brian Osborne
[Bioperl-l] Bio::DB::GenBank Brian Osborne
[Bioperl-l] ASN.1 and BioPerl ? Peter.Robinson at t-online.de
[Bioperl-l] blastall call crashed Joke Reumers
[Bioperl-l] ASN.1 and BioPerl ? Pierre Rioux
[Bioperl-l] ASN1 and BioPerl (and XML too) Pierre Rioux
[Bioperl-l] Entrez Gene and bioperl-db Peter Robinson
WG: [Bioperl-l] dssp script Robinson, Peter
[Bioperl-l] help for parsing MAST output Sameet
[Bioperl-l] bioperl.pod one revision behind? Phillip SanMiguel
[Bioperl-l] capture of STDOUT from write_seq? Neil Saunders
[Bioperl-l] capture of STDOUT from write_seq? Neil Saunders
[Bioperl-l] bioperl-ext make problems Patrice Seyed
[Bioperl-l] bioperl-ext make problems Patrice Seyed
[Bioperl-l] Parseing tRNA sequences out of genbank file Jason Stajich
[Bioperl-l] The Feature changes which have broken compatibility Jason Stajich
[Bioperl-l] RE: [Gmod-gbrowse] features not displaying Jason Stajich
[Bioperl-l] Genbank LOCUS entry Jason Stajich
[Bioperl-l] problem with next_feature on Linux Jason Stajich
[Bioperl-l] EMBOSS/water interface Jason Stajich
[Bioperl-l] bioperl on Mac OSX Jason Stajich
[Bioperl-l] search by keyword Jason Stajich
[Bioperl-l] bioperl on Mac OSX Jason Stajich
Fwd: [Bioperl-l] bioperl on Mac OSX Jason Stajich
[Bioperl-l] bioperl on Mac OSX Jason Stajich
[Bioperl-l] Bio::OntologyIO choking on current GO Jason Stajich
[Bioperl-l] capture of STDOUT from write_seq? Jason Stajich
[Bioperl-l] gff to embl or genbank Jason Stajich
[Bioperl-l] capture of STDOUT from write_seq? Jason Stajich
[Bioperl-l] Remove gap only columns from alignment Jason Stajich
[Bioperl-l] AlignIO and SimpleAlign Jason Stajich
[Bioperl-l] Error when calling remove_gaps Jason Stajich
[Bioperl-l] no data for midline problem Jason Stajich
[Bioperl-l] How to get the Accession # of a DNA sequence from the Protein GI or Accession # Jason Stajich
[Bioperl-l] bioperl.pod one revision behind? Jason Stajich
[Bioperl-l] Using Bio::Matrix::PhylipDist Jason Stajich
[Bioperl-l] Re: [Gmod-gbrowse] features not displaying Lincoln Stein
[Bioperl-l] RE: [Gmod-gbrowse] features not displaying Lincoln Stein
[Bioperl-l] TGA as U in selenocystine fullCDS Elia Stupka
[Bioperl-l] IMGT parsing Elia Stupka
[Bioperl-l] Proposal for bio-perl updates: ACE assembly file Jordan Swanson
[Bioperl-l] Proposal for bio-perl updates: ACE assembly file Jordan Swanson
[Bioperl-l] Perl Implementation of K-differences Algorithm Waibhav Tembe
[Bioperl-l] Bio::Tools::Run::Alignment::Probcons Albert Vilella
[Bioperl-l] Bio::Tools::Run::Alignment::Probcons Albert Vilella
[Bioperl-l] TGA as U in selenocystine fullCDS Albert Vilella
[Bioperl-l] TGA as U in selenocystine fullCDS Albert Vilella
[Bioperl-l] What format is this? Supported with BioSeq::IO? Edward WIJAYA
[Bioperl-l] What format is this? Supported with BioSeq::IO? Edward WIJAYA
[Bioperl-l] Using Bio::Matrix::PhylipDist Iain Wallace
[Bioperl-l] Using Bio::Matrix::PhylipDist Iain Wallace
[Bioperl-l] Perl Implementation of K-differences Algorithm Andrew Walsh
[Bioperl-l] Parseing tRNA sequences out of genbank file Adam Witney
[Bioperl-l] Parseing tRNA sequences out of genbank file Adam Witney
[Bioperl-l] bioperl on Mac OSX Adam Witney
[Bioperl-l] bioperl on Mac OSX Adam Witney
[Bioperl-l] bioperl on Mac OSX Adam Witney
[Bioperl-l] problem with next_feature on Linux Guojun Yang
[Bioperl-l] bl2seq parsing confusion? Guojun Yang
[Bioperl-l] help on installation of bioperl in slave nodes. Guojun Yang
[Bioperl-l] no data for midline problem Guojun Yang
[Bioperl-l] "no data for midline" still occurs with bioperl 1.5 Guojun Yang
[Bioperl-l] getting database info from the blast report Jun Zhao
[Bioperl-l] help badr al-daihani
[Bioperl-l] urgent help with AcePerl badr al-daihani
[Bioperl-l] urgent help with AcePerl badr al-daihani
[Bioperl-l] bump in GD::SVG hz5 at njit.edu
[Bioperl-l] two colors on the same track, still not work hz5 at njit.edu
[Bioperl-l] KRISHNA KISHORE, II M.Sc (Bioinformatics) student krishna kishore kommana
[Bioperl-l] volunteers needed for Bioperl subhadra vedula
[Bioperl-l] a basic question yanfeng
[Bioperl-l] which one and how to configure(blastall) yanfeng
[Bioperl-l] Retrieve of GenBank protein sequences §d®a¼Ö

Last message date: Mon Feb 28 11:14:40 EST 2005
Archived on: Mon Feb 28 11:09:41 EST 2005

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