[Bioperl-l] Another small bump

[Mike Muratet]

On Fri, 11 Feb 2005, Brian Osborne wrote:

> Mike,
> 
> Ah. Error in the bioperl-db document, that should be
> "scripts/load_ncbi_taxonomy.pl".
> 
> Brian O.
> 
>

Brian

I just checked the directory (again) where I unpacked the tarball--I don't
see it. What was in the tarball:

In /usr/local/lib/perl5/site_perl/5.8.0/bioperl-db/scripts/biosql

bioentry2flat.pl
cgi-bin
clean_ontology.pl
del-assocs-sql.pl
drop_mysql_biosql_test_dbs
freshen-annot.pl
load_interpro.pl
load_ontology.pl
load_seqdatabase.pl
merge-unique-ann.pl
terms
update-on-new-date.pl
update-on-new-version.pl

It's not in the subdirectories. 

I recall seeing it last time I built a database on another machine (which
has been awhile).
 
I haven't had any problems loading sequences, but it would be a handy
table to have.

Thanks

Mike

> -----Original Message-----
> From: bioperl-l-bounces at portal.open-bio.org
> [mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Mike Muratet
> Sent: Friday, February 11, 2005 10:21 AM
> To: Hilmar Lapp
> Cc: bioperl-l at bioperl.org
> Subject: [Bioperl-l] Another small bump
> 
> 
> Hilmar
> 
> The bioperl-db installation notes speaks of load_taxonomy.pl in the biosql
> distribution. I got the CVS tarball and there doesn't appear to be any
> perl in it at all. I see in the archives that there was some discussion
> about where it should live. Where does it live?
> 
> Maybe there should be a 'beers for the developers' session in Detroit this
> summer....
> 
> Thanks
> 
> Mike
> 
> 
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