[Bioperl-l] Another small bump

[Brian Osborne]

Mike,

It's in the biosql package, not the bioperl-db package. Go to:

http://obda.open-bio.org/

or

http://cvs.open-bio.org/cgi-bin/viewcvs/viewcvs.cgi/biosql-schema/sql/?cvsro
ot=biosql


Brian O.

-----Original Message-----
From: bioperl-l-bounces at portal.open-bio.org
[mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Mike Muratet
Sent: Friday, February 11, 2005 1:59 PM
To: Brian Osborne
Cc: Hilmar Lapp; bioperl-l at bioperl.org
Subject: RE: [Bioperl-l] Another small bump




On Fri, 11 Feb 2005, Brian Osborne wrote:

> Mike,
>
> Ah. Error in the bioperl-db document, that should be
> "scripts/load_ncbi_taxonomy.pl".
>
> Brian O.
>
>

Brian

I just checked the directory (again) where I unpacked the tarball--I don't
see it. What was in the tarball:

In /usr/local/lib/perl5/site_perl/5.8.0/bioperl-db/scripts/biosql

bioentry2flat.pl
cgi-bin
clean_ontology.pl
del-assocs-sql.pl
drop_mysql_biosql_test_dbs
freshen-annot.pl
load_interpro.pl
load_ontology.pl
load_seqdatabase.pl
merge-unique-ann.pl
terms
update-on-new-date.pl
update-on-new-version.pl

It's not in the subdirectories.

I recall seeing it last time I built a database on another machine (which
has been awhile).

I haven't had any problems loading sequences, but it would be a handy
table to have.

Thanks

Mike

> -----Original Message-----
> From: bioperl-l-bounces at portal.open-bio.org
> [mailto:bioperl-l-bounces at portal.open-bio.org]On Behalf Of Mike Muratet
> Sent: Friday, February 11, 2005 10:21 AM
> To: Hilmar Lapp
> Cc: bioperl-l at bioperl.org
> Subject: [Bioperl-l] Another small bump
>
>
> Hilmar
>
> The bioperl-db installation notes speaks of load_taxonomy.pl in the biosql
> distribution. I got the CVS tarball and there doesn't appear to be any
> perl in it at all. I see in the archives that there was some discussion
> about where it should live. Where does it live?
>
> Maybe there should be a 'beers for the developers' session in Detroit this
> summer....
>
> Thanks
>
> Mike
>
>
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