[Bioperl-l] AlignIO and SimpleAlign

[michael watson (IAH-C)]

Hi

Is it safe to say that if I read in alignment using AlignIO, then call
remove_gaps on the SimpleAlign object, then access each sequence using
each_seq, and print each sequence out as fasta using SeqIO, that I will
have the original sequences that went to make up the alignment (exactly,
with gaps removed etc)?

Thanks
Mick