[Bioperl-l] MSG: acc does not exist, but acc # is OK
Arya Akmal
akmala at nmrc.navy.mil
Wed Feb 9 15:40:41 EST 2005
Hello-
I get the following exception thrown up if I try to retrieve _any_
GenBank sequence:
------------- EXCEPTION -------------
MSG: acc does not exist
STACK Bio::DB::WebDBSeqI::get_Seq_by_acc
/Library/Perl/5.8.1/Bio/DB/WebDBSeqI.pm:176
STACK toplevel test:47
--------------------------------------
in response to something as trivial as:
$gb = new Bio::DB::GenBank();
$seq = $gb->get_Seq_by_acc('M29081');
I have no trouble with any of the other supported DBs (including
RefSeq), but am consistently unable to retrieve anything using
Bio::DB::GenBank.
I've seen previous postings to this list
(http://bioperl.org/pipermail/bioperl-l/2004-February/014962.html)
on a similar problem, but I'm quite sure the accession numbers I'm
trying are bona fide. I've tried many different accession numbers and
IDs without success.
Has anyone seen this type of problem before?
thanks.
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