[Bioperl-l] two colors on the same track, still not work
hz5 at njit.edu
hz5 at njit.edu
Sun Feb 20 19:39:36 EST 2005
Hi everybody,
I am still struggling with two colors on the same track, if anybody can help
me, I would appreciate it a lot!
I want to have utr blue, coding seq brown, so I have utr splitlocations in one
feature, and coding seq splitlocations in another:
######################################################
my $f1 = Bio::SeqFeature::Generic->new(
-primary_tag => $geneid,
-seq_id => $nm,
-source_tag => $UTR_str,
-location => $splitlocation_utr,
);
my $f = Bio::SeqFeature::Generic->new(
-primary_tag => $geneid,
-source_tag => $coding_str,
-seq_id => $nm,
-location => $splitlocation,
);
push @allft, $f1;
push @allft, $f;
then I try to render @allft on one track, but color utr and coding sequence
differently use a subroutine for bgcolor:
#################################################
my $track_nm = $panel ->add_track(\@allft,
-glyph => 'generic',
-font2color => 'blue',
-connector => 'solid',
-bump => $bump,
-description => sub{
my $f_tmp = shift;
if($f_tmp->source_tag eq $dHSP_str){
return '';
}else{
return $f_tmp->seq_id;
}
},
-bgcolor => sub{
my $f_tmp = shift;
print "**".$colors{$f_tmp->source_tag}."\n";
return $colors{$f_tmp->source_tag};
},
);
I have %colors keyed by the source_tag I put in features. But it doesn't work.
Anybody knows how to fulfill this kind of functions?
Thanks!!!!
haibo
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