December 2006 Archives by author

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Starting: Fri Dec 1 00:56:02 UTC 2006
Ending: Sun Dec 31 19:36:47 UTC 2006
Messages: 234

[Bioperl-l] Problems with EMBL entries and fasta IDs? michael watson (IAH-C)
[Bioperl-l] Problems with EMBL entries and fasta IDs? michael watson (IAH-C)
[Bioperl-l] BLASTing with a seqio/seq object... Sendu Bala
[Bioperl-l] Error with supplied lineages importing uniprot data Sendu Bala
[Bioperl-l] Bioperl 1.5.2 RC5 install onWinXPActivePerl 5.8.8.819 Sendu Bala
[Bioperl-l] Bioperl 1.5.2 RC5 install on WinXP ActivePerl5.8.8.819 Sendu Bala
[Bioperl-l] Bioperl 1.5.2 RC5 install onWinXPActivePerl 5.8.8.819 Sendu Bala
[Bioperl-l] Bioperl 1.5.2 RC5 install on WinXP ActivePerl5.8.8.819 Sendu Bala
[Bioperl-l] Error with supplied lineages importing uniprot data Sendu Bala
[Bioperl-l] Error with supplied lineages importing uniprot data Sendu Bala
[Bioperl-l] Error with supplied lineages importing uniprot data Sendu Bala
[Bioperl-l] BLASTing with a seqio/seq object... Sendu Bala
[Bioperl-l] confused by Bio::Graphics Sendu Bala
[Bioperl-l] Timeline on the 1.5.2 release? Sendu Bala
[Bioperl-l] Timeline on the 1.5.2 release? Sendu Bala
[Bioperl-l] Bioperl 1.5.2 Release Sendu Bala
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Sendu Bala
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Sendu Bala
[Bioperl-l] [Bioperl-announce-l] Bioperl 1.5.2 Release Sendu Bala
[Bioperl-l] bioperl-run parameter question Sendu Bala
[Bioperl-l] bioperl-run parameter question Sendu Bala
[Bioperl-l] StandAloneBlast->blastall array of Bio::Seq objects Sendu Bala
[Bioperl-l] (no subject) Sendu Bala
[Bioperl-l] Bio::SeqFeature::Annotated and mandatory type checking Sendu Bala
[Bioperl-l] [Gmod-gbrowse] xyplot data alignment problem? Sendu Bala
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Sendu Bala
[Bioperl-l] NO BLAST Sendu Bala
[Bioperl-l] [Gmod-gbrowse] xyplot data alignment problem? Sendu Bala
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Sendu Bala
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Sendu Bala
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Sendu Bala
[Bioperl-l] module to find out primer binding sites in a genome sequence Sendu Bala
[Bioperl-l] problems installing bioperl Sendu Bala
[Bioperl-l] [Gmod-gbrowse] problems installing bioperl Sendu Bala
[Bioperl-l] problems installing bioperl Sendu Bala
[Bioperl-l] problems installing bioperl Sendu Bala
[Bioperl-l] Using Muscle parameter within bioperl Sendu Bala
[Bioperl-l] suggestions for suitable 'taxon' object Sendu Bala
[Bioperl-l] Problem with : EUtilities - Proxy Sendu Bala
[Bioperl-l] Biodiversity graphic Benoit Ballester
[Bioperl-l] Bio::Graphics xyplot Keith Anthony Boroevich
[Bioperl-l] BLAST reports Keith Anthony Boroevich
[Bioperl-l] Bio::Graphics::Glyph::dna Paul Boutros
[Bioperl-l] How to use Bio::Graphics::Glyph::dna? Paul Boutros
[Bioperl-l] How to use Bio::Graphics::Glyph::dna? Paul Boutros
[Bioperl-l] module to find out primer binding sites in a genome sequence Kevin Brown
[Bioperl-l] Bio::SimpleAlign Kevin Brown
[Bioperl-l] Using frame info from GFF in getting a Seq->spliced_seq Scott Cain
[Bioperl-l] Bio::SeqFeature::Annotated and mandatory type checking Scott Cain
[Bioperl-l] Bio::SeqFeature::Annotated and mandatory type checking Scott Cain
[Bioperl-l] problems installing bioperl Scott Cain
[Bioperl-l] problem Scott Cain
[Bioperl-l] multiple glyph elements in one track Scott Cain
[Bioperl-l] problems installing bioperl Scott Cain
[Bioperl-l] bp_seqfeature_load / Bio::DB::SeqFeature::Store::GFF3Loader problems augmenting Flybase annotation Cook, Malcolm
[Bioperl-l] [Root-l] Intermittent MySQL problems on BioPerl wiki Mauricio Herrera Cuadra
[Bioperl-l] Bioperl 1.5.2 Release Mauricio Herrera Cuadra
[Bioperl-l] [Bioperl-announce-l] Bioperl 1.5.2 Release Mauricio Herrera Cuadra
[Bioperl-l] BioPerl page in Wikipedia Mauricio Herrera Cuadra
[Bioperl-l] module to find out primer binding sites in a genome sequence Sean Davis
[Bioperl-l] [Bioperl-microarray] SOFT parsers Sean Davis
[Bioperl-l] [Bioperl-microarray] SOFT parsers Allen Day
[Bioperl-l] acquiring a local refseq + index Erik
[Bioperl-l] confused by Bio::Graphics Fairley, Derek
[Bioperl-l] BLAST reports Fairley, Derek
[Bioperl-l] needle parser in bioperl? Fairley, Derek
[Bioperl-l] needle parser in bioperl? Fairley, Derek
[Bioperl-l] Problem with : EUtilities - Proxy Anthony Ferrari
[Bioperl-l] Problem with : EUtilities - Proxy Anthony Ferrari
[Bioperl-l] Problem with : EUtilities - Proxy Anthony Ferrari
[Bioperl-l] Problem with : EUtilities - Proxy Anthony Ferrari
[Bioperl-l] Problem with : EUtilities - Proxy Anthony Ferrari
[Bioperl-l] Bioperl 1.5.2 RC5 install onWinXPActivePerl 5.8.8.819 Chris Fields
[Bioperl-l] Bioperl 1.5.2 RC5 install on WinXP ActivePerl5.8.8.819 Chris Fields
[Bioperl-l] Bioperl 1.5.2 RC5 install onWinXPActivePerl 5.8.8.819 Chris Fields
[Bioperl-l] Bioperl 1.5.2 RC5 installonWinXPActivePerl 5.8.8.819 Chris Fields
[Bioperl-l] Error with supplied lineages importing uniprot data Chris Fields
[Bioperl-l] Bioperl 1.5.2 RC5 installonWinXPActivePerl 5.8.8.819 Chris Fields
[Bioperl-l] Error with supplied lineages importing uniprot data Chris Fields
[Bioperl-l] Error with supplied lineages importing uniprot data Chris Fields
[Bioperl-l] Error with supplied lineages importing uniprot data Chris Fields
[Bioperl-l] BioPerl Wiki is down Chris Fields
[Bioperl-l] confused by Bio::Graphics Chris Fields
[Bioperl-l] Timeline on the 1.5.2 release? Chris Fields
[Bioperl-l] Timeline on the 1.5.2 release? Chris Fields
[Bioperl-l] Build.PL changes Chris Fields
[Bioperl-l] Bioperl 1.5.2 Release Chris Fields
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110species Chris Fields
[Bioperl-l] different syntaxes for SeqI constructor and Factory constructor? Chris Fields
[Bioperl-l] different syntaxes for SeqI constructor and Factory constructor? Chris Fields
[Bioperl-l] [Bioperl-announce-l] Bioperl 1.5.2 Release Chris Fields
[Bioperl-l] Using frame info from GFF in gettinga Seq->spliced_seq Chris Fields
[Bioperl-l] NAR Database Issue Papers Chris Fields
[Bioperl-l] need help with phrap parser Chris Fields
[Bioperl-l] Using frame info from GFF ingettinga Seq->spliced_seq Chris Fields
[Bioperl-l] Using frame info from GFF in getting aSeq->spliced_seq Chris Fields
[Bioperl-l] writing blastxml Chris Fields
[Bioperl-l] Driver program for PestFind.pm Chris Fields
[Bioperl-l] bioperl-run parameter question Chris Fields
[Bioperl-l] bioperl-run parameter question Chris Fields
[Bioperl-l] bioperl-run parameter question Chris Fields
[Bioperl-l] bioperl-run parameter question Chris Fields
[Bioperl-l] Using frame info from GFF in getting aSeq->spliced_seq Chris Fields
[Bioperl-l] needle parser in bioperl? Chris Fields
[Bioperl-l] Using frame info from GFF in getting aSeq->spliced_seq Chris Fields
[Bioperl-l] problem in running needle Chris Fields
[Bioperl-l] Using frame info from GFF in getting aSeq->spliced_seq Chris Fields
[Bioperl-l] Proposal for Meta data Chris Fields
[Bioperl-l] StandAloneBlast->blastall array of Bio::Seq objects Chris Fields
[Bioperl-l] StandAloneBlast->blastall array of Bio::Seq objects Chris Fields
[Bioperl-l] Proposal for Meta data Chris Fields
[Bioperl-l] Proposal for Meta data Chris Fields
[Bioperl-l] Bio::SeqFeature::Annotated and mandatory type checking Chris Fields
[Bioperl-l] Bio::SearchIO::blast::next_result exception thrown Chris Fields
[Bioperl-l] [Gmod-gbrowse] xyplot data alignment problem? Chris Fields
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Chris Fields
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Chris Fields
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Chris Fields
[Bioperl-l] Proposal for Meta data Chris Fields
[Bioperl-l] [Gmod-gbrowse] xyplot data alignment problem? Chris Fields
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Chris Fields
[Bioperl-l] Proposal for Meta data Chris Fields
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Chris Fields
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Chris Fields
[Bioperl-l] [Gmod-gbrowse] problems installing bioperl Chris Fields
[Bioperl-l] Problem with : EUtilities - Proxy Chris Fields
[Bioperl-l] Bio::Tools::Glimmer for glimmer2/3 Chris Fields
[Bioperl-l] suggestions for suitable 'taxon' object Chris Fields
[Bioperl-l] Problem with : EUtilities - Proxy Chris Fields
[Bioperl-l] Problem with : EUtilities - Proxy Chris Fields
[Bioperl-l] Problem with : EUtilities - Proxy Chris Fields
[Bioperl-l] Problem with : EUtilities - Proxy Chris Fields
[Bioperl-l] Problem with : EUtilities - Proxy Chris Fields
[Bioperl-l] BioFetch: Adding databases Chris Fields
[Bioperl-l] acquiring a local refseq + index Chris Fields
[Bioperl-l] acquiring a local refseq + index Chris Fields
[Bioperl-l] writing blastxml Bob Freeman
[Bioperl-l] codeml Filipe Garrett
[Bioperl-l] PAML files Filipe Garrett
[Bioperl-l] PAML files Filipe Garrett
[Bioperl-l] codeml Filipe Garrett
[Bioperl-l] Upgrading my BioPerl RC via ppm? Nathan S. Haigh
[Bioperl-l] Bioperl 1.5.2 RC5 install onWinXPActivePerl 5.8.8.819 Nathan S. Haigh
[Bioperl-l] Bioperl 1.5.2 RC5 installonWinXPActivePerl 5.8.8.819 Nathan S. Haigh
[Bioperl-l] Bioperl 1.5.2 RC5 installonWinXPActivePerl 5.8.8.819 Nathan S. Haigh
[Bioperl-l] Timeline on the 1.5.2 release? Nathan S. Haigh
[Bioperl-l] Timeline on the 1.5.2 release? Nathan S. Haigh
[Bioperl-l] Bioperl 1.5.2 Release Nathan S. Haigh
[Bioperl-l] bioperl-run parameter question Nathan S. Haigh
[Bioperl-l] BioPerl Wiki is down Conrad Halling
[Bioperl-l] BioFetch: Adding databases Samuel GRANJEAUD - IR/IFR137
[Bioperl-l] Using frame info from GFF in getting a Seq->spliced_seq Amir Karger
[Bioperl-l] Using frame info from GFF in getting a Seq->spliced_seq Amir Karger
[Bioperl-l] Using frame info from GFF in gettinga Seq->spliced_seq Amir Karger
[Bioperl-l] Using frame info from GFF in getting aSeq->spliced_seq Amir Karger
[Bioperl-l] Using frame info from GFF in getting aSeq->spliced_seq Amir Karger
[Bioperl-l] get mRNA details for a gene Ahmet Kurdoglu
[Bioperl-l] Error with supplied lineages importing uniprot data Hilmar Lapp
[Bioperl-l] Bioperl-db doesn't seem to load all entries Hilmar Lapp
[Bioperl-l] Bioperl 1.5.2 Release Hilmar Lapp
[Bioperl-l] [Gmod-gbrowse] xyplot data alignment problem? Hilmar Lapp
[Bioperl-l] acquiring a local refseq + index Hilmar Lapp
[Bioperl-l] Proposal for Meta data Heikki Lehvaslaiho
[Bioperl-l] Bio::SimpleAlign Heikki Lehvaslaiho
[Bioperl-l] Using Muscle parameter within bioperl Shrinivasrao P. Mane
[Bioperl-l] confused by Bio::Graphics David Messina
[Bioperl-l] BLAST reports David Messina
[Bioperl-l] Proposal for Meta data David Messina
[Bioperl-l] Proposal for Meta data David Messina
[Bioperl-l] Proposal for Meta data David Messina
[Bioperl-l] need help with phrap parser Phillip San Miguel
[Bioperl-l] Proposal for Meta data Chris Mungall
[Bioperl-l] a stupid question Joe Newcomer
[Bioperl-l] An announcement Brian Osborne
[Bioperl-l] different syntaxes for SeqI constructor and Factory constructor? Brian Osborne
[Bioperl-l] Using frame info from GFF in getting aSeq->spliced_seq Brian Osborne
[Bioperl-l] needle parser in bioperl? Brian Osborne
[Bioperl-l] (no subject) Luba Pardo
[Bioperl-l] NO BLAST Luba Pardo
[Bioperl-l] module to find out primer binding sites in a genome sequence Gowthaman Ramasamy
[Bioperl-l] problems installing bioperl Stephan Roessner
[Bioperl-l] module to find out primer binding sites in a genome sequence Torsten Seemann
[Bioperl-l] problem Somil Sharma
[Bioperl-l] Bioperl 1.5.2 Release Jason Stajich
[Bioperl-l] Using frame info from GFF in getting a Seq->spliced_seq Jason Stajich
[Bioperl-l] StandAloneBlast->blastall array of Bio::Seq objects Jason Stajich
[Bioperl-l] Proposal for Meta data Jason Stajich
[Bioperl-l] needle parser in bioperl? Jason Stajich
[Bioperl-l] Bio::SearchIO::blast::next_result exception thrown Jason Stajich
[Bioperl-l] PAML files Jason Stajich
[Bioperl-l] codeml Jason Stajich
[Bioperl-l] Bio::Graphics xyplot Lincoln Stein
[Bioperl-l] [Gmod-gbrowse] xyplot data alignment problem? Lincoln Stein
[Bioperl-l] [Gmod-gbrowse] xyplot data alignment problem? Lincoln Stein
[Bioperl-l] bp_seqfeature_load / Bio::DB::SeqFeature::Store::GFF3Loader problems augmenting Flybase annotation Lincoln Stein
[Bioperl-l] How to use Bio::Graphics::Glyph::dna? Lincoln Stein
[Bioperl-l] problem in running needle Boris Steipe
[Bioperl-l] StandAloneBlast->blastall array of Bio::Seq objects Andrew Stewart
[Bioperl-l] StandAloneBlast->blastall array of Bio::Seq objects Andrew Stewart
[Bioperl-l] StandAloneBlast->blastall array of Bio::Seq objects Andrew Stewart
[Bioperl-l] StandAloneBlast->blastall array of Bio::Seq objects Andrew Stewart
[Bioperl-l] Bio::SearchIO::blast::next_result exception thrown Andrew Stewart
[Bioperl-l] Bio::Tools::Glimmer for glimmer2/3 Andrew Stewart
[Bioperl-l] imagemaps with heterogeneous_segments Anh-Thu Tieu
[Bioperl-l] imagemaps with heterogeneous_segments Anh-Thu Tieu
[Bioperl-l] multiple glyph elements in one track Anh-Thu Tieu
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Gabriel Valiente
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Gabriel Valiente
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Gabriel Valiente
[Bioperl-l] Script taxonomy2tree version 1.4 crashed on 110 species Gabriel Valiente
[Bioperl-l] Bio::SeqFeature::Annotated and mandatory type checking Matthew Vaughn
[Bioperl-l] Bio::SeqFeature::Annotated and mandatory type checking Matthew Vaughn
[Bioperl-l] PAML files Albert Vilella
[Bioperl-l] Using Muscle parameter within bioperl Albert Vilella
[Bioperl-l] problems installing bioperl Rutger Vos
[Bioperl-l] suggestions for suitable 'taxon' object Rutger Vos
[Bioperl-l] [Summary] Re: suggestions for suitable 'taxon' object Rutger Vos
[Bioperl-l] Bioperl-db doesn't seem to load all entries pelikan at cs.pitt.edu
[Bioperl-l] Biodiversity graphic giovani
[Bioperl-l] different syntaxes for SeqI constructor and Factory constructor? zhihua li
[Bioperl-l] confused by Bio::Graphics richard
[Bioperl-l] need help with phrap parser neeti somaiya
[Bioperl-l] need help in phredPhrap neeti somaiya
[Bioperl-l] problem in running needle neeti somaiya
[Bioperl-l] needle parser in bioperl? neeti somaiya
[Bioperl-l] needle parser in bioperl? neeti somaiya
[Bioperl-l] needle parser in bioperl? neeti somaiya
[Bioperl-l] needle parser in bioperl? neeti somaiya
[Bioperl-l] Driver program for PestFind.pm synapse
[Bioperl-l] confused by Bio::Graphics rbirnie at totalise.co.uk
[Bioperl-l] confused by Bio::Graphics rbirnie at totalise.co.uk
[Bioperl-l] CN=Deb Groskreutz/OU=MSN/O=TWT is out of the office. DGroskreutz at twt.com
[Bioperl-l] One more load_seqdatabase.pl question gang wu
[Bioperl-l] Biodiversity graphic gang wu

Last message date: Sun Dec 31 19:36:47 UTC 2006
Archived on: Mon Jun 16 02:47:45 UTC 2014

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