[Bioperl-l] Bioperl-l Digest, Vol 144, Issue 6

[黎新年]

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From:  "bioperl-l-request";<bioperl-l-request at mailman.open-bio.org>;
Date:  Mon, Apr 20, 2015 08:00 PM
To:  "bioperl-l"<bioperl-l at mailman.open-bio.org>; 

Subject:  Bioperl-l Digest, Vol 144, Issue 6



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Today's Topics:

   1.  Problem Installing Bio::DB::EUtilities (Warren Gallin)


----------------------------------------------------------------------

Message: 1
Date: Sun, 19 Apr 2015 13:37:25 -0600
From: Warren Gallin <wgallin at ualberta.ca>
To: BioPerl List <Bioperl-l at mailman.open-bio.org>
Subject: [Bioperl-l] Problem Installing Bio::DB::EUtilities
Message-ID: <D0F7DD50-C606-4D8C-8706-8DAED1A27C98 at ualberta.ca>
Content-Type: text/plain; charset=utf-8

After a machine crash I have had to install all my software anew, using OS X 10.10.3 on a brand new macBook Pro.

I was able to install BioPerl, but when I have tried to install Bio::DB::EUtilities I consistently get the following failure after the tests are run:
??????????????????????????????????????????????????????????????????????????

[clipped]

All tests successful.
Files=21, Tests=756,  3 wallclock secs ( 0.13 usr  0.04 sys +  2.91 cusr  0.47 csys =  3.55 CPU)
Result: PASS
  CJFIELDS/Bio-EUtilities-1.73.tar.gz
Tests succeeded but one dependency not OK (inc::TestHelper)
  CJFIELDS/Bio-EUtilities-1.73.tar.gz
  [dependencies] -- NA
Failed during this command:
 CJFIELDS/Bio-EUtilities-1.73.tar.gz          : make_test NO one dependency not OK (inc::TestHelper)


???????????????????????????????????????????????????????????

inc::Test is not, as far as I can tell, a separate module, but rather something internal to Bio::DB::EUtilities

So my question is, how do I get Utilities installed so I can access NCBI data?

Warren Gallin




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End of Bioperl-l Digest, Vol 144, Issue 6
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