[Bioperl-l] bp_genbank2gff3 and method "binomial" problem
Luis A. M. Quintales
lamq at usal.es
Wed Jun 18 11:50:16 UTC 2008
Hello!
I want to convert a set of EMBL files (genome of S.pombe version Sep
04) to GFF files.
First I try
bp_genbank2gff3.pl --format EMBL chromosome1.contig.embl
and I obtain
Can't call method "binomial" on an undefined value at bp_genbank2gff3.pl
line 674, <FH> line 103671
So, I convert the embl to genbank file using a perl program with
Bio::SeqIO methods. This works. Then, I retry
bp_genbank2gff3.pl chromosome1.gb
and ... I obtain again the same error
Can't call method "binomial" on an undefined value at bp_genbank2gff3.pl
line 674, <FH> line 103496
Some help?
Thank you.
--
==================================================
Luis Antonio Miguel Quintales
Departamento de Informática y Automática
Facultad de Ciencias
Universidad de Salamanca
Plaza de la Merced s/n
37008-SALAMANCA
SPAIN
==================================================
Tel.: +34-923-294400(ext.1513)
Fax.: +34-923-294584
E-mail: lamq at usal.es
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