December 2006 Archives by date

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Starting: Tue Dec 12 23:57:44 UTC 2006
Ending: Mon Jan 1 03:36:39 UTC 2007
Messages: 195

• [BioRuby-cvs] bioruby/doc Design.rd.ja,1.7,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc TODO.rd.ja,1.16,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc BioRuby.rd.ja,1.10,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio phylogenetictree.rb,1.1,1.2   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/db newick.rb,1.1,1.2   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/db newick.rb,1.2,1.3   Naohisa Goto
• [BioRuby-cvs] bioruby/lib bio.rb,1.70,1.71   Naohisa Goto
• [BioRuby-cvs] bioruby/test/unit/bio test_tree.rb,1.2,1.3   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio tree.rb,1.2,1.3   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/db newick.rb,1.3,1.4   Naohisa Goto
• [BioRuby-cvs] bioruby/test/unit/bio/db test_newick.rb,1.1,1.2   Naohisa Goto
• [BioRuby-cvs] bioruby/lib bio.rb,1.71,1.72   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio alignment.rb,1.16,1.17   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/db newick.rb,1.4,1.5   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio alignment.rb,1.17,1.18   Naohisa Goto
• [BioRuby-cvs] bioruby/test/unit/bio test_alignment.rb,1.7,1.8   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio alignment.rb,1.18,1.19   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl clustalw.rb, 1.11, 1.12 mafft.rb, 1.11, 1.12 sim4.rb, 1.6, 1.7   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio alignment.rb,1.19,1.20   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/clustalw report.rb,1.10,1.11   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/mafft report.rb,1.9,1.10   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl clustalw.rb, 1.12, 1.13 mafft.rb, 1.12, 1.13 sim4.rb, 1.7, 1.8   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl clustalw.rb, 1.13, 1.14 mafft.rb, 1.13, 1.14 sim4.rb, 1.8, 1.9   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl clustalw.rb,1.14,1.15   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl clustalw.rb,1.15,1.16   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl clustalw.rb, 1.16, 1.17 mafft.rb, 1.14, 1.15   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/gcg - New directory   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/phylip - New directory   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/iprscan - New directory   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/iprscan - New directory   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/data/iprscan - New directory   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/iprscan test_report.rb, NONE, 1.1   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/appl/iprscan report.rb,NONE,1.1   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/data/iprscan merged.raw,NONE,1.1   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby ChangeLog,1.54,1.55   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio alignment.rb,1.20,1.21   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/gcg msf.rb, NONE, 1.1 seq.rb, NONE, 1.1   Naohisa Goto
• [BioRuby-cvs] bioruby/lib bio.rb,1.72,1.73   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/io flatfile.rb,1.51,1.52   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/gcg seq.rb,1.1,1.2   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/phylip alignment.rb,NONE,1.1   Naohisa Goto
• [BioRuby-cvs] bioruby/lib bio.rb,1.73,1.74   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/lib/bio/io sql.rb,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/appl/phylip distance_matrix.rb, NONE, 1.1   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/phylip distance_matrix.rb, 1.1, 1.2   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/db newick.rb,1.5,1.6   Naohisa Goto
• [BioRuby-cvs] bioruby/lib bio.rb,1.74,1.75   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/appl/mafft report.rb,1.10,1.11   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/io sql.rb,1.6,1.7   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/io flatfile.rb,1.52,1.53   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio tree.rb,1.3,1.4   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio tree.rb,1.4,1.5   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio tree.rb,1.5,1.6   Naohisa Goto
• [BioRuby-cvs] bioruby/lib/bio/db nexus.rb,NONE,1.1   Chris Zmasek
• [BioRuby-cvs] bioruby/test/unit/bio/db test_nexus.rb,NONE,1.1   Chris Zmasek
• [BioRuby-cvs] bioruby/lib/bio/db nexus.rb,1.1,1.2   Chris Zmasek
• [BioRuby-cvs] bioruby/lib/bio/shell/rails Rakefile,1.1,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/test test_helper.rb, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script server,1.1,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script runner,1.1,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script/process spinner, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script/process spawner, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script/process reaper, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script plugin,1.1,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script/performance profiler, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script/performance benchmarker, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script generate, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script destroy,1.1,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script console,1.1,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script breakpointer, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/script about,1.1,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public/stylesheets main.css, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public robots.txt, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public/javascripts prototype.js, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public/javascripts effects.js, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public/javascripts dragdrop.js, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public/javascripts controls.js, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public index.html, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public/images rails.png, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public/images icon.png, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public favicon.ico, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public dispatch.rb, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public dispatch.fcgi, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public dispatch.cgi, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public 500.html, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public 404.html, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/public .htaccess, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/doc README_FOR_APP, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/config routes.rb, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/config/environments test.rb, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/config/environments production.rb, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/config/environments development.rb, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/config environment.rb, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/config database.yml, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/config boot.rb,1.1,NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/app/views/shell show.rhtml, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/app/views/shell index.rhtml, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/app/views/shell history.rhtml, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/app/views/layouts shell.rhtml, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/app/models shell_connection.rb, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/app/helpers application_helper.rb, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/app/controllers shell_controller.rb, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/app/controllers application.rb, 1.1, NONE   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators - New directory   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby - New directory   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates - New directory   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby/templates _classes.rhtml, NONE, 1.1 _methods.rhtml, NONE, 1.1 _modules.rhtml, NONE, 1.1 _result.rhtml, NONE, 1.1 _variables.rhtml, NONE, 1.1 bioruby.css, NONE, 1.1 bioruby.png, NONE, 1.1 bioruby.rhtml, NONE, 1.1 bioruby_controller.rb, NONE, 1.1 bioruby_helper.rb, NONE, 1.1 commands.rhtml, NONE, 1.1 history.rhtml, NONE, 1.1 index.rhtml, NONE, 1.1 shell_helper.rb, NONE, 1.1   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/rails/vendor/plugins/generators/bioruby bioruby_generator.rb, NONE, 1.1   Katayama Toshiaki
• [BioRuby-cvs] bioruby/bin bioruby,1.16,1.17   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio shell.rb,1.16,1.17   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell setup.rb, NONE, 1.1 irb.rb, NONE, 1.1 script.rb, NONE, 1.1 web.rb, 1.1, 1.2   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell core.rb,1.21,1.22   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell interface.rb,1.14,1.15   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell object.rb,1.1,1.2   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell demo.rb,1.2,1.3   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin codon.rb,1.14,1.15   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin keggapi.rb,1.10,1.11   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin entry.rb, 1.8, 1.9 seq.rb, 1.18, 1.19 blast.rb, 1.1, 1.2 psort.rb, 1.1, 1.2   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin midi.rb,1.7,1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/db/kegg kgml.rb,1.5,1.6   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/shell/plugin seq.rb,1.19,1.20   Katayama Toshiaki
• [BioRuby-cvs] bioruby/test/unit/bio/shell/plugin test_seq.rb, 1.7, 1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib bio.rb,1.75,1.76   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio/data aa.rb,0.18,0.19   Katayama Toshiaki
• [BioRuby-cvs] bioruby/lib/bio map.rb, 1.8, 1.9 location.rb, 0.26, 0.27   Katayama Toshiaki
• [BioRuby-cvs] bioruby README.DEV,1.11,1.12   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc KEGG_API.rd, 1.2, 1.3 KEGG_API.rd.ja, 1.8, 1.9   Katayama Toshiaki
• [BioRuby-cvs] bioruby/bin bioruby,1.17,1.18   Katayama Toshiaki
• [BioRuby-cvs] bioruby gemspec.rb,1.7,1.8   Katayama Toshiaki
• [BioRuby-cvs] bioruby/test/unit/bio/appl test_blast.rb,1.3,1.4   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio test_alignment.rb, 1.8, 1.9 test_db.rb, 1.2, 1.3 test_feature.rb, 1.2, 1.3 test_shell.rb, 1.5, 1.6   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db test_fasta.rb, 1.3, 1.4 test_gff.rb, 1.4, 1.5 test_prosite.rb, 1.4, 1.5   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/tmhmm test_report.rb, 1.2, 1.3   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/blast test_report.rb, 1.3, 1.4 test_xmlparser.rb, 1.4, 1.5   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/genscan test_report.rb, 1.2, 1.3   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/sosui test_report.rb, 1.3, 1.4   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/targetp test_report.rb, 1.3, 1.4   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/hmmer test_report.rb, 1.1, 1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/data test_aa.rb, 1.4, 1.5 test_codontable.rb, 1.4, 1.5   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db/kegg test_genes.rb,1.3,1.4   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/db/embl test_common.rb, 1.2, 1.3 test_embl.rb, 1.3, 1.4 test_uniprot.rb, 1.3, 1.4   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/util test_sirna.rb,1.2,1.3   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/sequence test_common.rb, 1.2, 1.3 test_compat.rb, 1.1, 1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/io test_ddbjxml.rb, 1.1, 1.2 test_fastacmd.rb, 1.1, 1.2   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby ChangeLog,1.55,1.56   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc KEGG_API.rd, 1.3, 1.4 KEGG_API.rd.ja, 1.9, 1.10   Katayama Toshiaki
• [BioRuby-cvs] bioruby/doc KEGG_API.rd, 1.4, 1.5 KEGG_API.rd.ja, 1.10, 1.11   Katayama Toshiaki
• [BioRuby-cvs] bioruby/test/data/blast 2.2.15.blastp.m7,NONE,1.1   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby/test/unit/bio/appl/blast test_xmlparser.rb, 1.5, 1.6   Mitsuteru C. Nakao
• [BioRuby-cvs] bioruby ChangeLog,1.56,1.57   Naohisa Goto
• [BioRuby-cvs] bioruby/doc Changes-0.7.rd,1.17,1.18   Naohisa Goto
• [BioRuby-cvs] bioruby/test/unit/bio/db test_rebase.rb,1.2,1.3   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/util test_color_scheme.rb, 1.1, 1.2 test_contingency_table.rb, 1.2, 1.3   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/util/restriction_enzyme/analysis test_calculated_cuts.rb, 1.1, 1.2 test_sequence_range.rb, 1.1, 1.2   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/util/restriction_enzyme/single_strand test_cut_locations_in_enzyme_notation.rb, 1.1, 1.2   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/util/restriction_enzyme/double_stranded test_aligned_strands.rb, 1.1, 1.2 test_cut_location_pair.rb, 1.1, 1.2 test_cut_location_pair_in_enzyme_notation.rb, 1.1, 1.2 test_cut_locations.rb, 1.1, 1.2 test_cut_locations_in_enzyme_notation.rb, 1.1, 1.2   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/util/restriction_enzyme test_analysis.rb, 1.3, 1.4 test_double_stranded.rb, 1.1, 1.2 test_integer.rb, 1.1, 1.2 test_single_strand.rb, 1.1, 1.2 test_single_strand_complement.rb, 1.1, 1.2 test_string_formatting.rb, 1.1, 1.2   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util color_scheme.rb,1.2,1.3   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util/color_scheme buried.rb, 1.2, 1.3 helix.rb, 1.2, 1.3 hydropathy.rb, 1.2, 1.3 nucleotide.rb, 1.2, 1.3 strand.rb, 1.3, 1.4 taylor.rb, 1.2, 1.3 turn.rb, 1.2, 1.3 zappo.rb, 1.2, 1.3   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib bio.rb,1.76,1.77   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util contingency_table.rb,1.4,1.5   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib bio.rb,1.77,1.78   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/db rebase.rb,1.4,1.5   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme enzymes.yaml, 1.1, 1.2   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib bio.rb,1.78,1.79   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/single_strand cut_locations_in_enzyme_notation.rb, 1.1, 1.2   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/analysis calculated_cuts.rb, 1.1, 1.2 cut_range.rb, 1.1, 1.2 cut_ranges.rb, 1.1, 1.2 fragment.rb, 1.1, 1.2 fragments.rb, 1.1, 1.2 horizontal_cut_range.rb, 1.1, 1.2 sequence_range.rb, 1.1, 1.2 tags.rb, 1.1, 1.2 vertical_cut_range.rb, 1.1, 1.2   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util restriction_enzyme.rb,1.4,1.5   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme analysis.rb, 1.5, 1.6 cut_symbol.rb, 1.1, 1.2 double_stranded.rb, 1.1, 1.2 integer.rb, 1.1, 1.2 single_strand.rb, 1.1, 1.2 single_strand_complement.rb, 1.1, 1.2 string_formatting.rb, 1.1, 1.2   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/double_stranded aligned_strands.rb, 1.1, 1.2 cut_location_pair.rb, 1.1, 1.2 cut_location_pair_in_enzyme_notation.rb, 1.1, 1.2 cut_locations.rb, 1.1, 1.2 cut_locations_in_enzyme_notation.rb, 1.1, 1.2   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/appl/hmmer report.rb,1.10,1.11   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/appl/blast xmlparser.rb,1.15,1.16   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/sequence test_aa.rb, 1.1, 1.2 test_na.rb, 1.2, 1.3   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/db/embl test_sptr.rb,1.5,1.6   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/io fastacmd.rb,1.13,1.14   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio test_reference.rb,1.1,1.2   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/db fasta.rb,1.26,1.27   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio reference.rb,1.22,1.23   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/data test_na.rb,1.6,1.7   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/appl hmmer.rb,1.7,1.8   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util contingency_table.rb,1.5,1.6   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/db rebase.rb,1.5,1.6   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/util test_restriction_enzyme.rb, NONE, 1.1   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/db test_rebase.rb,1.3,1.4   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util restriction_enzyme.rb,1.5,1.6   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/util test_restriction_enzyme.rb, 1.1, 1.2   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/db rebase.rb,1.6,1.7   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme analysis.rb, 1.6, 1.7 cut_symbol.rb, 1.2, 1.3   Trevor Wennblom
• [BioRuby-cvs] bioruby/test/unit/bio/util/restriction_enzyme test_cut_symbol.rb, NONE, 1.1 test_double_stranded.rb, 1.2, 1.3   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util restriction_enzyme.rb,1.6,1.7   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/analysis cut_ranges.rb, 1.2, 1.3 sequence_range.rb, 1.2, 1.3 tags.rb, 1.2, 1.3   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util restriction_enzyme.rb,1.7,1.8   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/analysis fragment.rb, 1.2, 1.3 sequence_range.rb, 1.3, 1.4 tags.rb, 1.3, NONE   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme single_strand.rb, 1.2, 1.3 string_formatting.rb, 1.2, 1.3   Trevor Wennblom
• [BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/single_strand cut_locations_in_enzyme_notation.rb, 1.2, 1.3   Trevor Wennblom

Last message date: Mon Jan 1 03:36:39 UTC 2007
Archived on: Mon Jun 16 03:01:37 UTC 2014

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