[BioRuby-cvs] bioruby/lib/bio/util/restriction_enzyme/analysis calculated_cuts.rb, 1.1, 1.2 cut_range.rb, 1.1, 1.2 cut_ranges.rb, 1.1, 1.2 fragment.rb, 1.1, 1.2 fragments.rb, 1.1, 1.2 horizontal_cut_range.rb, 1.1, 1.2 sequence_range.rb, 1.1, 1.2 tags.rb, 1.1, 1.2 vertical_cut_range.rb, 1.1, 1.2
Trevor Wennblom
trevor at dev.open-bio.org
Sun Dec 31 21:50:33 UTC 2006
Update of /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis
In directory dev.open-bio.org:/tmp/cvs-serv32395/restriction_enzyme/analysis
Modified Files:
calculated_cuts.rb cut_range.rb cut_ranges.rb fragment.rb
fragments.rb horizontal_cut_range.rb sequence_range.rb tags.rb
vertical_cut_range.rb
Log Message:
Updated license for RestrictionEnzyme.
Index: vertical_cut_range.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis/vertical_cut_range.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** vertical_cut_range.rb 1 Feb 2006 07:34:11 -0000 1.1
--- vertical_cut_range.rb 31 Dec 2006 21:50:31 -0000 1.2
***************
*** 1,2 ****
--- 1,11 ----
+ #
+ # bio/util/restrction_enzyme/analysis/vertical_cut_range.rb -
+ #
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
+ #
+ # $Id$
+ #
require 'pathname'
libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
***************
*** 10,44 ****
#
! # bio/util/restriction_enzyme/analysis/vertical_cut_range.rb -
! #
! # Copyright:: Copyright (C) 2006 Trevor Wennblom <trevor at corevx.com>
! # License:: LGPL
! #
! # $Id$
! #
! #
! #--
! #
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
! #
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #
! #++
#
#
-
- =begin rdoc
- bio/util/restriction_enzyme/analysis/vertical_cut_range.rb -
- =end
class VerticalCutRange < CutRange
attr_reader :p_cut_left, :p_cut_right
--- 19,28 ----
#
! # bio/util/restrction_enzyme/analysis/vertical_cut_range.rb -
#
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
#
class VerticalCutRange < CutRange
attr_reader :p_cut_left, :p_cut_right
***************
*** 67,73 ****
@range.include?(i)
end
!
! end
!
! end
! end
--- 51,55 ----
@range.include?(i)
end
! end # VerticalCutRange
! end # Analysis
! end # Bio::RestrictionEnzyme
Index: fragment.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis/fragment.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** fragment.rb 1 Feb 2006 07:34:11 -0000 1.1
--- fragment.rb 31 Dec 2006 21:50:31 -0000 1.2
***************
*** 1,2 ****
--- 1,11 ----
+ #
+ # bio/util/restrction_enzyme/analysis/fragment.rb -
+ #
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
+ #
+ # $Id$
+ #
require 'pathname'
libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
***************
*** 13,47 ****
#
! # bio/util/restriction_enzyme/analysis/fragment.rb -
! #
! # Copyright:: Copyright (C) 2006 Trevor Wennblom <trevor at corevx.com>
! # License:: LGPL
! #
! # $Id$
! #
! #
! #--
! #
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
! #
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #
! #++
#
#
-
- =begin rdoc
- bio/util/restriction_enzyme/analysis/fragment.rb -
- =end
class Fragment
--- 22,31 ----
#
! # bio/util/restrction_enzyme/analysis/fragment.rb -
#
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
#
class Fragment
***************
*** 74,82 ****
df
end
!
!
!
! end
!
! end
! end
--- 58,62 ----
df
end
! end # Fragment
! end # Analysis
! end # Bio::RestrictionEnzyme
Index: horizontal_cut_range.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis/horizontal_cut_range.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** horizontal_cut_range.rb 1 Feb 2006 07:34:11 -0000 1.1
--- horizontal_cut_range.rb 31 Dec 2006 21:50:31 -0000 1.2
***************
*** 1,2 ****
--- 1,11 ----
+ #
+ # bio/util/restrction_enzyme/analysis/horizontal_cut_range.rb -
+ #
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
+ #
+ # $Id$
+ #
require 'pathname'
libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
***************
*** 10,44 ****
#
! # bio/util/restriction_enzyme/analysis/horizontal_cut_range.rb -
! #
! # Copyright:: Copyright (C) 2006 Trevor Wennblom <trevor at corevx.com>
! # License:: LGPL
! #
! # $Id$
! #
! #
! #--
! #
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
! #
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #
! #++
#
#
-
- =begin rdoc
- bio/util/restriction_enzyme/analysis/horizontal_cut_range.rb -
- =end
class HorizontalCutRange < CutRange
attr_reader :p_cut_left, :p_cut_right
--- 19,28 ----
#
! # bio/util/restrction_enzyme/analysis/horizontal_cut_range.rb -
#
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
#
class HorizontalCutRange < CutRange
attr_reader :p_cut_left, :p_cut_right
***************
*** 69,75 ****
@range.include?(i)
end
!
! end
!
! end
! end
--- 53,57 ----
@range.include?(i)
end
! end # HorizontalCutRange
! end # Analysis
! end # Bio::RestrictionEnzyme
Index: fragments.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis/fragments.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** fragments.rb 1 Feb 2006 07:34:11 -0000 1.1
--- fragments.rb 31 Dec 2006 21:50:31 -0000 1.2
***************
*** 1,2 ****
--- 1,11 ----
+ #
+ # bio/util/restrction_enzyme/analysis/fragments.rb -
+ #
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
+ #
+ # $Id$
+ #
require 'pathname'
libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
***************
*** 8,42 ****
#
! # bio/util/restriction_enzyme/analysis/fragments.rb -
! #
! # Copyright:: Copyright (C) 2006 Trevor Wennblom <trevor at corevx.com>
! # License:: LGPL
! #
! # $Id$
! #
! #
! #--
! #
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
! #
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #
! #++
#
#
-
- =begin rdoc
- bio/util/restriction_enzyme/analysis/fragments.rb -
- =end
class Fragments < Array
--- 17,26 ----
#
! # bio/util/restrction_enzyme/analysis/fragments.rb -
#
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
#
class Fragments < Array
***************
*** 58,64 ****
pretty_fragments
end
!
! end
!
! end
! end
--- 42,46 ----
pretty_fragments
end
! end # Fragments
! end # Analysis
! end # Bio::RestrictionEnzyme
Index: tags.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis/tags.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** tags.rb 1 Feb 2006 07:34:11 -0000 1.1
--- tags.rb 31 Dec 2006 21:50:31 -0000 1.2
***************
*** 1,2 ****
--- 1,3 ----
+ # to be removed
require 'pathname'
libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
***************
*** 10,45 ****
class Analysis
- #
- # bio/util/restriction_enzyme/analysis/tags.rb -
- #
- # Copyright:: Copyright (C) 2006 Trevor Wennblom <trevor at corevx.com>
- # License:: LGPL
- #
- # $Id$
- #
- #
- #--
- #
- # This library is free software; you can redistribute it and/or
- # modify it under the terms of the GNU Lesser General Public
- # License as published by the Free Software Foundation; either
- # version 2 of the License, or (at your option) any later version.
- #
- # This library is distributed in the hope that it will be useful,
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
- # Lesser General Public License for more details.
- #
- # You should have received a copy of the GNU Lesser General Public
- # License along with this library; if not, write to the Free Software
- # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
- #
- #++
- #
- #
-
- =begin rdoc
- bio/util/restriction_enzyme/analysis/tags.rb -
- =end
class Tags < Hash
end
--- 11,14 ----
Index: cut_range.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis/cut_range.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** cut_range.rb 1 Feb 2006 07:34:11 -0000 1.1
--- cut_range.rb 31 Dec 2006 21:50:31 -0000 1.2
***************
*** 1,2 ****
--- 1,12 ----
+ #
+ # bio/util/restrction_enzyme/analysis/cut_range.rb -
+ #
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
+ #
+ # $Id$
+ #
+
require 'pathname'
libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
***************
*** 10,47 ****
#
! # bio/util/restriction_enzyme/analysis/cut_range.rb -
! #
! # Copyright:: Copyright (C) 2006 Trevor Wennblom <trevor at corevx.com>
! # License:: LGPL
! #
! # $Id$
! #
! #
! #--
! #
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
! #
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #
! #++
#
#
-
- =begin rdoc
- bio/util/restriction_enzyme/analysis/cut_range.rb -
- =end
class CutRange
! end
!
! end
! end
--- 20,31 ----
#
! # bio/util/restrction_enzyme/analysis/cut_range.rb -
#
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
#
class CutRange
! end # CutRange
! end # Analysis
! end # Bio::RestrictionEnzyme
\ No newline at end of file
Index: cut_ranges.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis/cut_ranges.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** cut_ranges.rb 1 Feb 2006 07:34:11 -0000 1.1
--- cut_ranges.rb 31 Dec 2006 21:50:31 -0000 1.2
***************
*** 1,2 ****
--- 1,11 ----
+ #
+ # bio/util/restrction_enzyme/analysis/cut_ranges.rb -
+ #
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
+ #
+ # $Id$
+ #
require 'pathname'
libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
***************
*** 10,50 ****
#
! # bio/util/restriction_enzyme/analysis/cut_ranges.rb -
! #
! # Copyright:: Copyright (C) 2006 Trevor Wennblom <trevor at corevx.com>
! # License:: LGPL
! #
! # $Id$
! #
! #
! #--
! #
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
! #
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #
! #++
#
#
-
- =begin rdoc
- bio/util/restriction_enzyme/analysis/cut_ranges.rb -
- =end
class CutRanges < Array
def min; self.collect{|a| a.min}.flatten.sort.first; end
def max; self.collect{|a| a.max}.flatten.sort.last; end
def include?(i); self.collect{|a| a.include?(i)}.include?(true); end
! end
!
! end
! end
--- 19,33 ----
#
! # bio/util/restrction_enzyme/analysis/cut_ranges.rb -
#
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
#
class CutRanges < Array
def min; self.collect{|a| a.min}.flatten.sort.first; end
def max; self.collect{|a| a.max}.flatten.sort.last; end
def include?(i); self.collect{|a| a.include?(i)}.include?(true); end
! end # CutRanges
! end # Analysis
! end # Bio::RestrictionEnzyme
Index: calculated_cuts.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis/calculated_cuts.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** calculated_cuts.rb 1 Feb 2006 07:34:11 -0000 1.1
--- calculated_cuts.rb 31 Dec 2006 21:50:31 -0000 1.2
***************
*** 1,2 ****
--- 1,12 ----
+ #
+ # bio/util/restrction_enzyme/analysis/calculated_cuts.rb -
+ #
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
+ #
+ # $Id$
+ #
+
require 'pathname'
libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
***************
*** 11,56 ****
#
! # bio/util/restriction_enzyme/analysis/calculated_cuts.rb -
! #
! # Copyright:: Copyright (C) 2006 Trevor Wennblom <trevor at corevx.com>
! # License:: LGPL
! #
! # $Id$
! #
! #
! #--
! #
! # This library is free software; you can redistribute it and/or
! # modify it under the terms of the GNU Lesser General Public
! # License as published by the Free Software Foundation; either
! # version 2 of the License, or (at your option) any later version.
! #
! # This library is distributed in the hope that it will be useful,
! # but WITHOUT ANY WARRANTY; without even the implied warranty of
! # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
! # Lesser General Public License for more details.
! #
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #
! #++
#
#
-
- =begin rdoc
- bio/util/restriction_enzyme/analysis/calculated_cuts.rb -
-
-
- 1 2 3 4 5 6 7
- G A|T T A C A
- +-----+
- C T A A T|G T
- 1 2 3 4 5 6 7
-
- Primary cut = 2
- Complement cut = 5
- Horizontal cuts = 3, 4, 5
- =end
class CalculatedCuts
include CutSymbol
--- 21,40 ----
#
! # bio/util/restrction_enzyme/analysis/calculated_cuts.rb -
#
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
+ #
+ # 1 2 3 4 5 6 7
+ # G A|T T A C A
+ # +-----+
+ # C T A A T|G T
+ # 1 2 3 4 5 6 7
+ #
+ # Primary cut = 2
+ # Complement cut = 5
+ # Horizontal cuts = 3, 4, 5
#
class CalculatedCuts
include CutSymbol
***************
*** 214,220 ****
end
!
! end
!
! end
! end
--- 198,202 ----
end
! end # CalculatedCuts
! end # Analysis
! end # Bio::RestrictionEnzyme
\ No newline at end of file
Index: sequence_range.rb
===================================================================
RCS file: /home/repository/bioruby/bioruby/lib/bio/util/restriction_enzyme/analysis/sequence_range.rb,v
retrieving revision 1.1
retrieving revision 1.2
diff -C2 -d -r1.1 -r1.2
*** sequence_range.rb 1 Feb 2006 07:34:11 -0000 1.1
--- sequence_range.rb 31 Dec 2006 21:50:31 -0000 1.2
***************
*** 1,2 ****
--- 1,11 ----
+ #
+ # bio/util/restrction_enzyme/analysis/sequence_range.rb -
+ #
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
+ #
+ # $Id$
+ #
require 'pathname'
libpath = Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 5, 'lib')).cleanpath.to_s
***************
*** 15,51 ****
class Bio::RestrictionEnzyme
class Analysis
-
- #
- # bio/util/restriction_enzyme/analysis/sequence_range.rb -
- #
- # Copyright:: Copyright (C) 2006 Trevor Wennblom <trevor at corevx.com>
- # License:: LGPL
- #
- # $Id$
- #
- #
- #--
- #
- # This library is free software; you can redistribute it and/or
- # modify it under the terms of the GNU Lesser General Public
- # License as published by the Free Software Foundation; either
- # version 2 of the License, or (at your option) any later version.
- #
- # This library is distributed in the hope that it will be useful,
- # but WITHOUT ANY WARRANTY; without even the implied warranty of
- # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
- # Lesser General Public License for more details.
#
! # You should have received a copy of the GNU Lesser General Public
! # License along with this library; if not, write to the Free Software
! # Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
! #
! #++
#
#
-
- =begin rdoc
- bio/util/restriction_enzyme/analysis/sequence_range.rb -
- =end
class SequenceRange
--- 24,34 ----
class Bio::RestrictionEnzyme
class Analysis
#
! # bio/util/restrction_enzyme/analysis/sequence_range.rb -
#
+ # Author:: Trevor Wennblom <mailto:trevor at corevx.com>
+ # Copyright:: Copyright (c) 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com)
+ # License:: Distributes under the same terms as Ruby
#
class SequenceRange
***************
*** 224,231 ****
@cut_ranges << HorizontalCutRange.new( left, right )
end
!
!
! end
!
! end
! end
--- 207,211 ----
@cut_ranges << HorizontalCutRange.new( left, right )
end
! end # SequenceRange
! end # Analysis
! end # Bio::RestrictionEnzyme
\ No newline at end of file
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