[Bioperl-l] barcode split a paired-end fastq file

[Paul Cantalupo]

Hi Matthew,

I'm not sure about any Bioperl modules (hopefully somebody else will chime
in). But there are several routes for help on this matter.

1. Reply back to this message showing enough of your sequence file and your
list of 8 barcodes so we can provide further advice.
2. Post your question to http://stackoverflow.com/. Here though, you want
to make sure follow guidelines found here
<http://stackoverflow.com/help/mcve> and here
<http://stackoverflow.com/help/how-to-ask>.
3. Post your question to https://www.biostars.org/
<https://www.biostars.org/>. They probably have similar links for how to
ask a good question like stackoverflow but I do'nt have the links for them.

Paul


Paul Cantalupo
University of Pittsburgh

On Wed, May 25, 2016 at 4:08 PM, Matthew <mccormack at molbio.mgh.harvard.edu>
wrote:

> Are there any BioPerl modules that would help to split a barcoded fastq
> file ?
>
> I have tried FASTX-toolkit, but it does not work on paired-end data.
>
> The file I have been given is paired-end but a single file, and I have a
> list of 8 or so 4 letter barcodes.
>
>
> Matthew
>
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