[Bioperl-l] EXCEPTION: Bio::Root::Exception [From: Silav Bremos]

Chris Fields cjfields at illinois.edu
Mon Jan 17 16:14:43 UTC 2011


On Jan 14, 2011, at 10:51 PM, Silav wrote:

> 
> Tao Zhu <tzhu <at> mail.bnu.edu.cn> writes:
> 
> 
>> Hello! In fact the script doesn't work on my computer either. Probably
>> it has some problems with the swissprot database. 
>> use Bio::Perl; 
> 
>> $seq_object = get_sequence('genbank',"ECORHO"); 
>> write_sequence(">echrho.fasta",'fasta',$seq_object);
> 
> 
> Thanks for your response. The code with 'genbank' worked. Hopfully someone will
> fix the tutorial after reading this.

This should be fixed in on github, but I can check on it.

chris



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