[Bioperl-l] Getting whole gene info with SeachIO
Juan Jovel
jovel_juan at hotmail.com
Mon Jun 28 17:19:23 UTC 2010
Hello Everybody!
I generally use SearchIO to parse my blast reports. To extract hit name, I do:
...
while (my $hsp = $hit->next_hsp){
...
my $hit_name = $hit -> name();
...
}
It usually gives me something like:
ref|NC_006884.1|
How can I get ALL the information contained in the name line of that hit?, for example:
>gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome
THANKS IN ADVANCE!
JUAN
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