[Bioperl-l] maf write

Sahl, Jason JSahl at som.umaryland.edu
Mon Jun 28 14:04:06 UTC 2010

Hi.  I'm trying to write out an alignment in the maf format and I get this error:

------------- EXCEPTION: Bio::Root::NotImplemented -------------
MSG: Abstract method "Bio::AlignIO::maf::write_aln" is not implemented by package Bio::AlignIO::maf.
This is not your fault - author of Bio::AlignIO::maf should be blamed!

I'm using Perl 5.8.8.  Anyone know if there are plans to implement write_aln for maf files in the near future?  Or does anyone have an easy work around?

thank you,
Jason Sahl 

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