[Bioperl-l] Getting whole gene info with SeachIO

[Chris Fields]

$hit->description, I believe.

chris

On Jun 28, 2010, at 12:19 PM, Juan Jovel wrote:

> 
> Hello Everybody!
> 
> I generally use SearchIO to parse my blast reports.  To extract hit name, I do:
> 
> ...
> 
> while (my $hsp = $hit->next_hsp){
> ...
>   my $hit_name = $hit -> name();
> ...
> }
> 
> It usually gives me something like: 
> 
> ref|NC_006884.1|
> 
> How can I get ALL the information contained in the name line of that hit?, for example:
> 
>> gi|255928922|ref|NC_013085.1| Synechococcus phage S-RSM4, complete genome
> 
> THANKS IN ADVANCE!
> 
> JUAN
> 		 	   		  
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