[Bioperl-l] bp_biblio.pl doesn't work

spring gao gaospecial at gmail.com
Mon Feb 9 09:01:35 UTC 2009


Hi, all,


I have some questions about the usage of bp_biblio.pl .
when execute bp_biblio.pl example, return the following Errors.
who knows how to repair this problem? Thank you!

Information:
 bp_biblio.pl -v
1.006

Shell OUTPUT:
 bp_biblio.pl - -find java -attrs abstract -find perl
Looking for 'java' in attributes 'abstract'...
------------- EXCEPTION -------------
MSG: --- SOAP FAULT ---
soapenv:Server.userException embl.ebi.BibShare.BQSException: An empty query.
It may happen because of using non-existing attributes.
STACK Bio::DB::Biblio::soap::__ANON__
/usr/local/share/perl/5.8.8/Bio/DB/Biblio/soap.pm:109
STACK SOAP::Lite::call /usr/share/perl5/SOAP/Lite.pm:3412
STACK SOAP::Lite::__ANON__ /usr/share/perl5/SOAP/Lite.pm:3377
STACK Bio::DB::Biblio::soap::find /usr/local/share/perl/5.8.8/Bio/DB/Biblio/
soap.pm:393
STACK main::_find /usr/local/bin/bp_biblio.pl:214
STACK toplevel /usr/local/bin/bp_biblio.pl:107
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