[Bioperl-l] bp_biblio.pl doesn't work

[Brian Osborne]

Spring,

A bit late here, sorry about that.

I am not certain that this SOAP server is still completely  
operational. I would use NCBI eutils instead, so take a look at  
examples/biblio-eutils-example.pl and see if it meets your needs.


Brian O.


On Feb 9, 2009, at 4:01 AM, spring gao wrote:

> Hi, all,
>
>
> I have some questions about the usage of bp_biblio.pl .
> when execute bp_biblio.pl example, return the following Errors.
> who knows how to repair this problem? Thank you!
>
> Information:
> bp_biblio.pl -v
> 1.006
>
> Shell OUTPUT:
> bp_biblio.pl - -find java -attrs abstract -find perl
> Looking for 'java' in attributes 'abstract'...
> ------------- EXCEPTION -------------
> MSG: --- SOAP FAULT ---
> soapenv:Server.userException embl.ebi.BibShare.BQSException: An  
> empty query.
> It may happen because of using non-existing attributes.
> STACK Bio::DB::Biblio::soap::__ANON__
> /usr/local/share/perl/5.8.8/Bio/DB/Biblio/soap.pm:109
> STACK SOAP::Lite::call /usr/share/perl5/SOAP/Lite.pm:3412
> STACK SOAP::Lite::__ANON__ /usr/share/perl5/SOAP/Lite.pm:3377
> STACK Bio::DB::Biblio::soap::find /usr/local/share/perl/5.8.8/Bio/DB/ 
> Biblio/
> soap.pm:393
> STACK main::_find /usr/local/bin/bp_biblio.pl:214
> STACK toplevel /usr/local/bin/bp_biblio.pl:107
> -------------------------------------
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